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Detailed information on CNT30597240


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697684Oryza meridionalisOryza sativa42.5337.0695.04282forward
CNT30555740Oryza meridionalisOryza glaberrima53.5433.4994.65355forward
CNT30371513Oryza meridionalisOryza glumipatula42.5326.3894.68282forward
CNT30104336Oryza meridionalisOryza rufipogon42.5325.2595.04282forward
CNT30578504Oryza meridionalisOryza barthii41.4824.8696275forward
CNT30604831Oryza meridionalisOryza punctata21.2724.0293.62141forward

Expression of CNT30597240

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MMICLGGFIFTSGALHGGGTSRQLPVVDRG*

>peptide 2 (82 aa)
MTPWRRRKAAGCPGEGLCPPSSLLEQQKQLWVQLALHLLSSLLLPMVLEQQPQIQPVLHLPSRFLLVLEQTHRHLRSCWHLQ*

>peptide 3 (46 aa)
WVGYTYVCMYVCCCATPQSYHTYKQAKLMQSLITGCHPATSVPWSI*

Sequence

>CNT30597240
GATGGGTAGGGTACACGTATGTATGTATGTATGTATGTTGCTGTGCCACACCACAATCATACCATACATACAAACAAGCTAAACTGATGCAGAGCCTAAT
AACCGGCTGTCACCCAGCAACGTCAGTTCCTTGGTCGATTTGATTACACAATGCAAATGCGAATGATTCCTAAAAGAAGTACATCACGGACAAGGGGAGG
ATGATGATTTGTTTGGGGGGTTTCATCTTCACTTCAGGTGCACTTCACGGCGGAGGCACCAGCCGGCAGCTGCCCGTTGTTGACAGGGGATGACTCCTTG
GCGGCGGCGGAAGGCGGCTGGCTGTCCTGGTGAGGGCCTTTGTCCGCCGAGTTCTCTACTGGAGCAGCAGAAGCAGCTTTGGGTTCAGCTGGCTTTGCAT
CTTCTTTCTTCTCTCCTCCTTCCGATGGTGCTGGAGCAGCAACCTCAGATTCAGCCGGTTTTGCATCTTCCATCTCGGTTTCTGCTGGTGCTGGAGCAGA
CGCATCGGCATCTGCGGTCTTGCTGGCATCTTCAGTAGTCTTCATCTCCACATCGGTGTCTTTTGGAGCATCTTCGCTAGGGGCCTCCTTCGCCTCTTCA
GCAGGCTTTGTCTCCACATCAGTCTCCTTTGGAGCATCTTCGCTAGGGGCCTCCTTGTCAGCT