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Detailed information on CNT30597234


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT005900, E-value = 3e-115

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30369385Oryza meridionalisOryza glumipatula8015.3593.06288reverse complement

Expression of CNT30597234

Peptides detected in this lncRNA

>peptide 1 (71 aa)
MLHPHPLKRDRRPRRSPGQDRPLLVTSVCPVPAHVPCCVTTPGPHQPCAPCLRNCDTHARETARVGSDTTL*

>peptide 2 (56 aa)
LQLVDMSILLILLSPAPGCYTLTPLREIDVPVDLQARIVPFWSRPCVQCQRMCHAV*

Sequence

>CNT30597234
GTTGCAACTTGTTGATATGAGTATTCTATTAATCCTATTAAGCCCTGCGCCAGGATGTTACACCCTCACCCCCTTAAGAGAGATCGACGTCCCCGTCGAT
CTCCAGGCCAGGATCGTCCCCTTTTGGTCACGTCCGTGTGTCCAGTGCCAGCGCATGTGCCATGCTGTGTGACCACTCCGGGTCCACACCAGCCATGCGC
ACCATGCCTGCGCAACTGCGACACACACGCCCGTGAAACCGCGAGAGTCGGCTCTGATACCACTTTGTAACGTCCCGCCTCTCCCAGGCCGGACTCGCTT
ACATCTGGTAGCTTTCATAGGTCATAGACGGCCCTCACAGACCAACACAAGTCTTTTCTG