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Detailed information on CNT30597233


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672500Oryza meridionalisSetaria viridis55.1663.0492.12203forward
CNT30404182Oryza meridionalisBeta vulgaris23.3716.5186.0586forward
CNT30563287Oryza meridionalisActinidia chinensis27.1721.5585100forward
CNT30555769Oryza meridionalisOryza glaberrima10086.5998.91368forward
CNT30440702Oryza meridionalisAegilops tauschii73.6482.1292.99271forward
CNT30689646Oryza meridionalisTriticum urartu60.0576.7492.76221forward
CNT30721908Oryza meridionalisTriticum spelta73.6485.4992.99271forward
CNT30361575Oryza meridionalisSorghum bicolor77.1744.4490.49284forward
CNT30322845Oryza meridionalisAsparagus officinalis96.7426.7981.74356forward
CNT30104304Oryza meridionalisOryza rufipogon96.210098.59354forward
CNT30578494Oryza meridionalisOryza barthii96.4710099.15355forward
CNT30118019Oryza meridionalisOryza nivara95.6510098.58352forward
CNT30333334Oryza meridionalisCynara cardunculus94.5743.6181.32348forward

Expression of CNT30597233

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MSSALGQHQAWQSSQEPDHSTRRCCWGCT*

>peptide 2 (33 aa)
VGVKPLGHLHGRDSGISPSHREVGAEPNLSTSP*

>peptide 3 (53 aa)
MYLIPASAICFQMLALRSVATFSKSSALLFPSQKDSRANLSSLLGPMRGYPTM*

Sequence

>CNT30597233
TAGTTGGTGTCAAACCACTTGGTCATCTCCATGGCAGGGACAGTGGCATTTCCCCTAGCCATCGAGAAGTAGGTGCTGAACCCAATCTCTCCACCAGTCC
ATGAGTAGCGCTCTGGGACAGCACCAAGCATGGCAGTCGAGTCAAGAACCTGATCATAGTACGAGAAGGTGTTGCTGGGGATGTACTTGATCCCAGCGTC
AGCCATTTGCTTCCAGATGCTGGCCCTGAGGTCGGTTGCAACCTTCTCCAAATCCTCAGCGCTGCTCTTCCCATCCCAGAAAGACTCCAGGGCAAACTTG
AGCTCCCTCTTGGGGCCCATGCGGGGGTACCCAACAATGTGAGACGCCATCTTTCTATAGAAAAAATA