Detailed information on CNT30597213


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT004288, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690051Oryza meridionalisOryza sativa87.8665.4294.381086reverse complement
CNT30554571Oryza meridionalisOryza glaberrima95.5556.8692.131181reverse complement
CNT30101181Oryza meridionalisOryza rufipogon94.3434.1194.851166reverse complement
CNT30574887Oryza meridionalisOryza barthii91.6771.2194.71133reverse complement

Expression of CNT30597213

Peptides detected in this lncRNA

>peptide 1 (65 aa)
MITVEQVKDKPVPNKACGNYKGCLNRCQNVRSLTTQTGLLASEENQPPFIALSPVQVQHISSTII*

>peptide 2 (42 aa)
MYKQMSPNGALIINHGLPKSVPTWHNMPTPPSNIIPSIIIHI*

>peptide 3 (41 aa)
MSITEDAAIRIDYTLIRGVELDPHDMNKDQMLDTPSSAVHK*

>peptide 4 (41 aa)
MSKCSVLNDSDGATCIRGKPTSLHRPITRPSSTYFINHYLV*

>peptide 5 (64 aa)
MHIYIHIDCIQIIFRESIGSICLGACLAAEGSHYPPLDISVFSESTEKKQYANKSQINMHMQNDQ

Sequence

>CNT30597213
GGGGTCTCTAGGTTCAACATTTGCATAAAGCTAATTTTATTGAGCAACTAATGAGTAAAATAAGCAAGGACAGGTAAATCTAGCATCATTTTAATTTATG
GACAGCAAGTATATAATTCTGAAATGTATAAGCAAATGAGCCCAAACGGCGCTCTCATCATCAACCATGGACTACCAAAGTCCGTACCAACATGGCACAA
CATGCCAACACCACCATCAAACATAATCCCATCCATAATAATCCACATTTGATGCTAACATGAGTGAGATACACATTAAGCAATGTCCATAACCGAGGAC
GCGGCTATTCGAATAGATTATACTCTGATCAGAGGTGTAGAACTGGACCCACACGATATGAACAAAGATCAAATGCTAGACACCCCATCGAGTGCGGTAC
ATAAGTGATTCAAGCTCATTACATGCCCTTTCTTAGCCCTACCCCAACCACCTATACCACGCTGGGGTTCTCGACGACTCAGTCACGTGCGTGCGTGATG
TGACCAAGGCGGGCGCACCACGCGGGAGGCAACCCCAGCCAACATAGGCACCCGAGGCCCTCCAAAGGGCTACCTGCCCTCACGTCTCTCCAACGTGGTA
TAAATGATCACAGTAGAACAAGTAAAGGACAAGCCGGTCCCAAATAAGGCATGTGGTAATTACAAAGGGTGCTTGAATAGATGTCAAAATGTTCGGTCCT
TAACGACTCAGACGGGGCTACTTGCATCAGAGGAAAACCAACCTCCCTTCATCGCCCTATCACCCGTCCAAGTTCAACATATTTCATCAACCATTATTTA
GTGTAAGTGCTCAAGTTTTATGCCCAATAATGCAAGTTGTCTATATACCACAATTAATAGCACTGTCCATCCCTATAGTTCTATTAGCACTAAGCATGGC
TAAGAATTAATGAATAAGACATCCCAAGTAATCTAAACCAGTGGTAATAGGGTATAAGGACAGCAATATCACAAGAACTAAATGCATAAATAGGTTCTAC
CCATACAACATAAACTGACAATATTAATATCTAGGCAATGCATGCATATATATATACATATAGATTGCATCCAAATCATTTTTAGAGAAAGCATAGGTTC
TATATGCTTAGGTGCTTGCCTTGCTGCTGAGGGTAGTCACTATCCTCCTCTGGATATCTCCGTATTCTCTGAATCTACCGAAAAGAAGCAATATGCGAAT
AAGAGCCAAATAAACATGCACATGCAAAATGATCAA