Detailed information on CNT30597212


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30100448Oryza meridionalisOryza rufipogon7.3356.1687.2164reverse complement
CNT30576123Oryza meridionalisOryza barthii2.9526.2990.9166reverse complement

Expression of CNT30597212

Peptides detected in this lncRNA

>peptide 1 (68 aa)
MYFGYKYNPRQCNQTRTLTVHRHLFYFHCFRRVLAFELGCIGFDLRQEVKLIMTACILGISAYIFMTL*

>peptide 2 (76 aa)
PFPLFFSPLPAAVATAAPRLAAVPAVGPGKPSFPLRRSSPRRAASLGREREERSGVARGRKEKDEREKREGYEGID*

>peptide 3 (50 aa)
MLCILGINITQDSVIKREHLRCIATFFTFIVFDEFLLSSWAASVLISDKR*

>peptide 4 (56 aa)
MQSSRSDKDILADICLRKIVFVYKGFGYMLPVSGRVTTWTTEQKFFQPHHQKSCVP*

>peptide 5 (37 aa)
MTWGPHRDLKAGLILSADHRTCGNPNQCRVQGLIKIS*

>peptide 6 (48 aa)
MGLTSGNSVVGALEGLVEVDIVRSRVVAGLGGRLRARRGFQRDRRRGW*

>peptide 7 (33 aa)
MGSFSSIAYDMGAPPGFKGRIDPECRSQNLWQS*

>peptide 8 (37 aa)
MSKPVIITMSKRVGVIGPWLNKKALCWTRNSLQPCSR*

>peptide 9 (29 aa)
MLYNLDQYCYLTSSVSICHQRRADRVRYQR

Sequence

>CNT30597212
CCCTTTCCCCTCTTTTTCTCCCCCCTTCCGGCCGCCGTAGCCACCGCCGCGCCGCGCCTTGCCGCCGTTCCCGCCGTCGGTCCGGGTAAGCCCTCTTTCC
CCCTTCGCCGCTCTTCGCCGCGCCGCGCCGCCTCGCTCGGCCGAGAGAGAGAAGAAAGGAGCGGAGTAGCGAGAGGAAGAAAAGAGAAGGATGAGAGAGA
GAAAAGAGAAGGCTATGAGGGGATAGATTAGAGTGGGCCCCACCGAGATTAGGGAATAGTAATCACCCTGTTAATCTGCATTAGACTAGCCTATGACCTG
TGGGCCCGGGTGGTTAAAAATCTAATTATGGGTAGTTTTTCATCTATAGCCTATGACATGGGGGCCCCACCGGGATTTAAAGGCCGGATTGATCCTGAGT
GCCGATCACAGAACTTGTGGCAATCCTAACCAATGCAGAGTTCAAGGTCTGATAAAGATATCCTAGCAGATATTTGCCTAAGGAAAATTGTTTTTGTCTA
CAAGGGCTTCGGCTATATGTTGCCAGTTAGTGGTAGGGTTACAACTTGGACCACAGAACAAAAATTTTTTCAGCCACATCATCAGAAAAGTTGTGTTCCT
TAGGGGACATAGGGCCTGTACCCATATTCATGGTGATATAGCCAGTCCAGCCACCTATAGTTCTGGTTTTGAAAGAGAACTTGCTCTTGGTATTCATACT
GACTGGGTTAGCCGATGATGTGATGTCCAAGCCAGTGATCATAACTATGTCCAAAAGGGTTGGTGTCATCGGTCCTTGGTTGAACAAGAAAGCATTGTGC
TGGACCAGAAATAGCTTGCAGCCTTGCAGCCGATAACATAGGTTCATCCTTATTCATTTCGGCTAGGGTCAGAGCCAGGCACTGTGCTATTCCAAGTTCT
TCTCAGTGAGTTTGTTTGCTAGCCGATACCCTCTTATACCAATCCAGCCAGGTTTTGACAGCAGATGGCCAAGATTTGAAAGCAATAGTCCAGTGGCCTA
AATTAGGGTTTGTCAGTCTGAAGGGAACTCTATAGTTTTCGGCATTGATAAGCTCAGTGGGGTCTGTGTTGCCGATTGGGCCCAAGAAAAACTGATTCTG
ATGAGCTAAACTAGGAACTGCGACCTGATGGGAAAGATGCTACAGCAGAGAAGAGAAGAAAAAAGCGGATCATGAAAGGAAGACAATCTGTAGCAAGGAA
GAAGAAAGATCTAACCGATGGGACTTACCTCAGGGAACTCGGTCGTCGGAGCGCTTGAGGGATTGGTGGAAGTCGACATCGTCAGATCTAGGGTTGTCGC
CGGACTTGGGGGTCGCCTGCGGGCTCGCCGAGGGTTTCAAAGGGATCGCCGGAGAGGTTGGTGACTAAAGCAGTGAAAACGGAAGTGACGACGTGAAAAG
CGGTGGTAACTATTTACAGAGGCGCGGTAACGGTCGAAACGGAAAAGAAGCCCTAGATTCTCTCGGGGTTAAGATTGAATAAATCCGCAACATTACAAAT
GTAACGGACTTGGGGGCCATGTGTTAACGACCAAATTTGGTAAATCATACATTGGAGTTGGAGTTAAAGCCGAAGCGGATTTGGAGGAAATCGATATTCT
CATAATCAAAGTGCGCATCAGTTGCAAACCGAATCGGCTACGGTGTACATCGGTTGATACCGAGTTGGACAGGGAAGCCGATACATCCGATTTCGGTAAA
GGGATCTTAGAATCATTGTCGGATTCGTTTTCAGTGCTTCATGAGAATTGCCATGTACGGATTGAGTCCGAAGAAGGCGATTGTATCTATTAATTAGGTT
ATTTTATGTAGTTTCCTTATAGATATTTTCGGTAAAAGTCCGCCTAAGGGACTTGATCGTATCTTGAGTTGTAATAGAGATAGGAGTCGTGTCCGACAAT
GACATGTTATGTATTTTGGGTATAAATATAACCCAAGACAGTGTAATCAAACGAGAACACTTACGGTGCATCGCCACCTTTTTTACTTTCATTGTTTTCG
ACGAGTTCTTGCTTTCGAGTTGGGCTGCATCGGTTTTGATCTCCGACAAGAGGTAAAGCTTATTATGACGGCTTGCATTCTCGGGATTAGTGCTTACATC
TTCATGACACTCTAATTCAGTTTATGTAAATCGTCAAGTTATTATATATGCTATATAATTTAGATCAATATTGCTATCTAACCTCATCGGTTAGCATCTG
TCACCAGAGAAGAGCCGATAGAGTTAGATATCAACGT