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Detailed information on CNT30597211


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697683Oryza meridionalisOryza sativa51.2843.0794.25261forward
CNT30555721Oryza meridionalisOryza glaberrima53.8326.7194.16274forward
CNT30109509Oryza meridionalisOryza longistaminata53.8336.5393.43274forward
CNT30604653Oryza meridionalisOryza punctata31.6313.8394.41161forward

Expression of CNT30597211

Peptides detected in this lncRNA

>peptide 1 (29 aa)
FPFVLPSTCSFISSSPNPSPVSTTKSTLK*

>peptide 2 (55 aa)
LSPLFFLRHVLSSLPPQIPLQSPPPNLPSSSRDRQELRPSRVVAAALLKAVVGVG*

>peptide 3 (47 aa)
MSFERAKPQSIKCSSIFNSGCTLPLRVCVFFFCFSMGNSACTPTFYC*

>peptide 4 (47 aa)
FPLCSSFDMFFHLFLPKSLSSLHHQIYPQVVEIDRSFDLQGWLQQHS*

>peptide 5 (31 aa)
MYSPSACVCFFLLFFDGQLCMYSHFLLLRLTL

Sequence

>CNT30597211
CTTTCCCCTTTGTTCTTCCTTCGACATGTTCTTTCATCTCTTCCTCCCCAAATCCCTCTCCAGTCTCCACCACCAAATCTACCCTCAAGTAGTAGAGATC
GACAGGAGCTTCGACCTTCAAGGGTGGTTGCAGCAGCACTCCTGAAGGCCGTGGTGGGCGTGGGCTGATTGCATCTGTTTGCGGCTGAGAGGCGGCGCCG
GGGCAGGGGTGAATCAACACCACGGCGAACTGTGCAGCCTGGTGTTGTCGAGCTGCTCTCTAGTTAGCAAAGCTTGATGACTTCTGGAAGTGCTATTACG
TACCATTTGCATTGGATACAACTACTGCAGAAGGCTATATTTGTCTTTTATTATGTCTTTTGAGAGAGCCAAGCCACAATCTATTAAGTGTTCGTCAATT
TTCAACTCTGGATGTACTCTCCCTCTGCGTGTGTGTGTTTTTTTCTTTTGTTTTTCGATGGGCAACTCTGCATGTACTCCCACTTTTTACTGTTGAGATT
AACTTTGTA