Detailed information on CNT30597201


BLAST search results

BLAST vs Swiss-Prot:
sp|Q84N29|NLTP3_WHEAT, E-value = 2e-29

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677319Oryza meridionalisSetaria viridis47.2243.5986.55119forward
CNT30523964Oryza meridionalisSetaria italica59.9247.4886.09151forward
CNT30471439Oryza meridionalisSaccharum spontaneum31.3529.783.5479forward
CNT30136754Oryza meridionalisLolium perenne5054.3186.51126forward
CNT30352809Oryza meridionalisEragrostis tef60.7135.1783.01153forward
CNT30104115Oryza meridionalisOryza rufipogon78.5765.7895.45198forward

Expression of CNT30597201

Peptides detected in this lncRNA

>peptide 1 (74 aa)
LLQSVERLMGKPTLTPHLPGTPATVPRLRDLMVPARVLRQRQAACRSAVVRAALFRPLTPLQHPWVIKLASFVQ*

>peptide 2 (67 aa)
LVAVGGEADGEANVDAALAGDAGDGAEVERLDGAGEGLEAAAGCLPVGGGAGGAVQALDAVAASLGN*

Sequence

>CNT30597201
CTTGTTGCAGTCGGTGGAGAGGCTGATGGGGAAGCCAACGTTGACGCCGCACTTGCCGGGGACGCCGGCGACGGTGCCGAGGTTGAGAGACTTGATGGTG
CCGGCGAGGGTCTTGAGGCAGCGGCAGGCTGCCTGCCGGTCGGCGGTGGTGCGGGCGGCGCTGTTCAGGCCCTTGACGCCGTTGCAGCATCCCTGGGTAA
TTAAGCTAGCTAGCTTCGTCCAGTGAGTGTCTCGTCGCCGGTGATCGATGGA