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Detailed information on CNT30597191


BLAST search results

BLAST vs Swiss-Prot:
sp|Q38793|RBS_AEGTA, E-value = 9e-25

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30521306Oryza meridionalisSetaria italica37.2413.490.74108forward
CNT30300099Oryza meridionalisTriticum aestivum46.5517.0794.07135forward
CNT30221053Oryza meridionalisHordeum vulgare46.5518.888.15135forward
CNT30393324Oryza meridionalisTriticum turgidum46.5512.8294.07135forward
CNT30555748Oryza meridionalisOryza glaberrima87.9310099.61255forward
CNT30437365Oryza meridionalisAegilops tauschii46.5539.2487.41135forward
CNT30665882Oryza meridionalisTriticum dicoccoides46.5514.6494.07135forward
CNT3067646Oryza meridionalisLeersia perrieri21.3830.196.7762forward
CNT30684524Oryza meridionalisTriticum urartu46.5514.0294.07135forward

Expression of CNT30597191

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MSSSSAVEALYAGSPAAYINSNRIMSFHPWPRL

>peptide 2 (50 aa)
IQRILPPLLTLPRPALLERRLTGSPAVDLSPWKGATEVAEEAITVGAIAT*

>peptide 3 (53 aa)
HTADPSTVADAAEAGAVGAAADGEPGGGFEPLEGSNGGGRGGHHGGGHSHVVS*

Sequence

>CNT30597191
GCATACAGCGGATCCTTCCACCGTTGCTGACGCTGCCGAGGCCGGCGCTGTTGGAGCGGCGGCTGACGGGGAGCCCGGCGGTGGATTTGAGCCCCTGGAA
GGGAGCAACGGAGGTGGCCGAGGAGGCCATCACGGTGGGGGCCATAGCCACGTAGTTAGCTAGCTAGCTTACTGGCTAGTAGTAGTAGAGTATGTCCAGT
AGCAGTGCTGTTGAGGCCCTGTACGCTGGTTCACCAGCAGCTTATATAAACAGCAATCGTATCATGTCATTTCATCCATGGCCACGGTTG