« Back to Oryza meridionalis search


Detailed information on CNT30597185


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000539, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697623Oryza meridionalisOryza sativa40.6622.4695.41392reverse complement
CNT30555766Oryza meridionalisOryza glaberrima33.829.6299.08326reverse complement
CNT30103182Oryza meridionalisOryza rufipogon49.0785.6995.77473reverse complement
CNT30117332Oryza meridionalisOryza nivara48.1351.194.83464reverse complement

Expression of CNT30597185

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MFFTCTWQSYVGWNSTSHPEINRFYRTVPI*

>peptide 2 (64 aa)
MSSQSGFTKSHGHNIVPWTINISIFTCASVNIIIALRGINLPPARGLKKNHYTEVPPLLDNLIS*

>peptide 3 (31 aa)
MLKGRNNNLPCSNANKSEIGNLIIRCLKYHML

>peptide 4 (39 aa)
MYALPVIHNVPNTLALSWQSFSVTNISGTCSTNSSPHAL*

Sequence

>CNT30597185
GAATACATGAAATGGTAATATTTGTGTAGAGTTAGGTTTACTTGCAGAAAGCAAAGAATATAGAGGAAGAAAGCCTATAATGTTTTAAATGCAACAATAT
TTAATAAAGTTTGGAATTAAGTTTCTAACCAAGATGCCATTGTGAGTCCCAATGTCCGATAACCATGAGCACGGCTATTCGAATAGTTTTGAGAATATTT
ATACTGCAGTAGATGTACGCTTTACCCGTAATCCATAACGTGCCAAACACATTAGCCTTGTCATGGCAAAGCTTTTCGGTTACTAACATCAGTGGTACCT
GTTCCACGAACTCTAGTCCCCATGCGCTCTGAACGTAACGTTATCAGCAGCGAGAGGAGTTTTGGCGTTCCCGAGGTATTTAGAGAGAACTGATTGTATG
ACACCATGTCATCGCAATCAGGGTTCACAAAATCACATGGCCATAATATAGTCCCCTGGACTATCAATATAAGTATATTTACCTGCGCCTCGGTAAATAT
CATAATTGCCCTTCGCGGCATAAATTTGCCTCCTGCGCGAGGACTTAAGAAGAACCACTATACAGAGGTACCACCTTTGCTAGATAACTTAATCAGCTAG
GTCTATGCCCATACGAGGATTGCGGTTGTACTCGTATGTTCTTCACATGTACTTGGCAGTCTTATGTCGGTTGGAACAGTACTAGCCACCCGGAAATCAA
CCGTTTCTACCGTACTGTCCCAATCTAAGTTCATTAAATTTTATGCATAATCTAACTAGGCAGGGCTAAGCAAAAGCTAGCATATCTGGTTTGCTATATG
TTCAGGTTATGCATTCAAAATCATGAATGACTAATGCATAGAAAAGAGATATAGAATATAGGGTAATTATGCTCAAGGGGAGGAATAATAACTTGCCTTG
CTCCAACGCAAATAAATCCGAGATAGGCAACCTGATTATCCGATGCTTGAAATACCACATGTTG