Detailed information on CNT30597179


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30555662Oryza meridionalisOryza glaberrima96.3610098.3529forward
CNT30371482Oryza meridionalisOryza glumipatula99.4599.0998.35546forward
CNT30104732Oryza meridionalisOryza rufipogon89.4410098.78491forward
CNT30578566Oryza meridionalisOryza barthii95.4510098.28524forward

Expression of CNT30597179

Peptides detected in this lncRNA

>peptide 1 (59 aa)
MSRRKLQSDEWWRIHARPCWYGRSDGYRRVVAEDIVADRSEREQYTRMCKNLSNNTSKL*

>peptide 2 (44 aa)
NTPPLPATSSFRFLYPVAAVAKGSWLPAPRNRRAEPAWWGGSEG*

>peptide 3 (76 aa)
LTLHRFQLLPLLDFFILWQQWRRVAGCRRPETGEQSRRGGAAARDEQEEAAERRVVAHPRAAVLVRAERWVSPGSG*

Sequence

>CNT30597179
TTAACACTCCACCGCTTCCAGCTACTTCCTCTTTTAGATTTCTTTATCCTGTGGCAGCAGTGGCGAAGGGTAGCTGGCTGCCGGCGCCCAGAAACCGGCG
AGCAGAGCCGGCGTGGTGGGGCGGCAGCGAGGGATGAGCAGGAGGAAGCTGCAGAGCGACGAGTGGTGGCGCATCCACGCGCGGCCGTGCTGGTACGGGC
GGAGCGATGGGTATCGCCGGGTAGTGGCTGAAGACATCGTTGCTGATAGGTCTGAAAGGGAGCAGTACACCAGGATGTGCAAGAACCTATCAAACAACAC
TTCGAAGCTCTGAGGTTTCAACTTCAGAGTTTACAACCCACACTCTGCTCCACATTTCATTTCTATCATGGGAGATGTCAAATAATTGTTGTAATGATTT
GAGAAGACAAGTAGAGAATAAATAAATGAGTAGCCGAATATTATTCATGTACTCTGTAGTTGAATCCATCAGGAGAGAAAGATATTTTTCTCATAAACAG
GGTTGATCGGAAGTTAAAAATTAATAATGACAGAGAACATGAGCATCTA