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Detailed information on CNT30597178


BLAST search results

BLAST vs Swiss-Prot:
sp|Q43766|NLTP3_HORVU, E-value = 1e-13

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697881Oryza meridionalisOryza sativa32.9337.596.3108forward
CNT30440524Oryza meridionalisAegilops tauschii20.738.9188.2468forward
CNT30367194Oryza meridionalisSorghum bicolor21.9530.3887.572forward
CNT30371396Oryza meridionalisOryza glumipatula31.7115.1893.27104forward
CNT30104684Oryza meridionalisOryza rufipogon31.7134.193.27104forward
CNT30118058Oryza meridionalisOryza nivara31.7119.4893.27104forward

Expression of CNT30597178

Peptides detected in this lncRNA

>peptide 1 (88 aa)
LLQSVERLMGKPTLTPHLPGTPATHPCVSPLLPVTYEMHGAIADPTCPHVIAADAPGAATTIATTTTTATTTLPFKAAIFKITDLIVG*

>peptide 2 (83 aa)
LVAVGGEADGEANVDAALAGDAGDASLRQPAPPRHIRDARRDRRPHLPARYRRRRPRRRHHHRHHHHHRHHHLTVQSRHIQDY*

Sequence

>CNT30597178
CTTGTTGCAGTCGGTGGAGAGGCTGATGGGGAAGCCAACGTTGACGCCGCACTTGCCGGGGACGCCGGCGACGCATCCCTGCGTCAGCCCGCTCCTCCCC
GTCACATACGAGATGCACGGCGCGATCGCCGACCCCACCTGCCCGCACGTTATCGCCGCCGACGCCCCCGGCGCCGCCACCACCATCGCCACCACCACCA
CCACCGCCACCACCACCTTACCGTTCAAAGCCGCCATATTCAAGATTACTGATTTGATCGTCGGATGATCGATGATCTGAGGATGATCGAGTAGCTAAGC
TAGCTAGCTAATCGTCGCCGCCGGTGAT