Detailed information on CNT30597173


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697886Oryza meridionalisOryza sativa79.0155.4294.24399forward
CNT30371519Oryza meridionalisOryza glumipatula75.8410099.48383forward
CNT30104637Oryza meridionalisOryza rufipogon98.4284.5299.6497forward
CNT30578440Oryza meridionalisOryza barthii10085.8899.8505forward
CNT30117979Oryza meridionalisOryza nivara80.5999.2799.75407forward

Expression of CNT30597173

Peptides detected in this lncRNA

>peptide 1 (79 aa)
CFLSLCLADLLLIVFLRSLAGSPLPGGRRRRWMLVGFTGSHSVRGSPFSQRQATIHGGEVFQAACSAPLLEVSVLFYED*

>peptide 2 (77 aa)
LLPFSLPRGFAPHRLSPLSRRLTATRRPPAEMDASWIHREPFSPRLSLQPTASDDPRRRSISGGLLCSPVGSFSSVL*

>peptide 3 (50 aa)
MIQEKEIQPCEYVTSIINLAYIYSKYLRACSPVTISLHVVNISIISLPDM*

>peptide 4 (38 aa)
MLTSHYFTSCCEHQYYQSTRYVRSEFFLLLSTLLCQND*

>peptide 5 (33 aa)
ASFLSASRICSSSSFSALSPAHRYPAAAGGDGC*

Sequence

>CNT30597173
CTGCTTCCTTTCTCTCTGCCTCGCGGATTTGCTCCTCATCGTCTTTCTCCGCTCTCTCGCCGGCTCACCGCTACCCGGCGGCCGCCGGCGGAGATGGATG
CTAGTTGGATTCACCGGGAGCCATTCAGTCCGCGGCTCTCCCTTCAGCCAACGGCAAGCGACGATCCACGGCGGCGAAGTATTTCAGGCGGCCTGCTCTG
CTCCCCTGTTGGAAGTTTCAGTTCTGTTTTATGAAGATTAGAAATTTCAGTTTATGATCCAGGAAAAGGAAATCCAGCCATGTGAGTATGTGACTTCAAT
TATAAATTTAGCTTATATTTATTCGAAATATCTGAGGGCATGCTCACCAGTCACTATTTCACTTCATGTTGTGAACATCAGTATTATCAGTCTACCAGAT
ATGTAAGATCAGAGTTTTTTTTGCTTCTCTCTACTTTGCTATGTCAGAATGATTAGGAAATGTCAAAATTGATTTTGAAGAAACAAACGGATGGTTCACT
TTTAC