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Detailed information on CNT30597166


BLAST search results

BLAST vs Swiss-Prot:
sp|Q2QLY5|METE1_ORYSJ, E-value = 5e-34

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672513Oryza meridionalisSetaria viridis20.2114.2591.2357forward
CNT30555741Oryza meridionalisOryza glaberrima66.3184.6298.4187forward
CNT30264857Oryza meridionalisBrassica rapa21.9920.687.162forward
CNT30367300Oryza meridionalisSorghum bicolor39.0124.3985.45110forward
CNT30105511Oryza meridionalisOryza longistaminata66.3174.897.33187forward
CNT3027096Oryza meridionalisPopulus trichocarpa27.322.1384.4277forward
CNT30104583Oryza meridionalisOryza rufipogon66.3188.2198.93187forward
CNT30118059Oryza meridionalisOryza nivara62.4160.0798.86176forward
CNT30604899Oryza meridionalisOryza punctata66.3180.2697.86187forward

Expression of CNT30597166

Peptides detected in this lncRNA

>peptide 1 (82 aa)
PFPTIASRDSRVVRDAARSSAQMLRPSTTPAKRDSRVVRDAARSSAQMLRPSTTPAKRYFPEGKPALLIRSRVLAPRIRSKP*

>peptide 2 (92 aa)
LSNNSLKRLKGGERCGKIISPDVASIHNTGKKRLKGGERCGEIISPDVASIHNTGKEVLSRGETSTLDKVKSLGSTDKVKTISSHAVQGCEGP

Sequence

>CNT30597166
CCCTTTCCAACAATAGCCTCAAGAGACTCAAGGGTGGTGAGAGATGCGGCAAGATCATCAGCCCAGATGTTGCGTCCATCCACAACACCGGCAAAAAGAG
ACTCAAGGGTGGTGAGAGATGCGGCGAGATCATCAGCCCAGATGTTGCGTCCATCCACAACACCGGCAAAGAGGTACTTTCCAGAGGGGAAACCAGCACT
CTTGATAAGGTCAAGAGTCTTGGCTCCACGGATAAGGTCAAAACCATAAGCAGTCACGCTGTTCAGGGATGTGAGGGTCCTG