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Detailed information on CNT30597159


BLAST search results

BLAST vs Swiss-Prot:
sp|Q53M52|TBA2_ORYSJ, E-value = 1e-71

BLAST vs NONCODE:
NONGMAT000220, E-value = 2e-43

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678752Oryza meridionalisSetaria viridis37.5738.3690.07272forward
CNT30517675Oryza meridionalisJuglans regia29.1434.9384.36211forward
CNT30727923Oryza meridionalisCorchorus capsularis28.7317.5786.54208forward
CNT30403515Oryza meridionalisBeta vulgaris25.4171.687.5184forward
CNT30710214Oryza meridionalisGlycine max26.863.8286.6194forward
CNT3086234Oryza meridionalisVigna radiata23.4832.0882.94170forward
CNT30237104Oryza meridionalisBrassica oleracea27.0760.4985.2196forward
CNT30555384Oryza meridionalisOryza glaberrima50.4142.6998.08365forward
CNT3059767Oryza meridionalisArabidopsis lyrata22.2422.7183.85161forward
CNT3075316Oryza meridionalisBrassica juncea26.865.3287.11194forward
CNT30265527Oryza meridionalisBrassica rapa28.3133.2885.37205forward
CNT30611949Oryza meridionalisArabis alpina16.4434.3990.76119forward
CNT30136247Oryza meridionalisLolium perenne20.4448.3791.89148forward
CNT30228Oryza meridionalisZea mays27.2126.390.36197forward
CNT30606894Oryza meridionalisGossypium raimondii28.7356.9983.17208forward
CNT30716286Oryza meridionalisMalus domestica golden25.5514.1788.65185forward
CNT30721658Oryza meridionalisTriticum spelta28.7350.1291.35208forward
CNT30619808Oryza meridionalisCajanus cajan25.8331.4385.56187forward
CNT30356256Oryza meridionalisLactuca sativa19.7527.6184.62143forward
CNT30371352Oryza meridionalisOryza glumipatula52.2142.7693.12378forward
CNT30482824Oryza meridionalisChara braunii22.6521.5584.15164forward
CNT3052700Oryza meridionalisAmborella trichopoda18.3742.0984.21133forward
CNT30106557Oryza meridionalisOryza longistaminata16.7156.5497.52121forward
CNT3024757Oryza meridionalisPopulus trichocarpa28.7379.6983.17208forward
CNT30147962Oryza meridionalisBrachypodium distachyon27.959.5991.58202forward
CNT30578324Oryza meridionalisOryza barthii51.838.1994.67375forward
CNT30593783Oryza meridionalisEragrostis curvula30.2541.4890.41219forward
CNT30726236Oryza meridionalisLupinus angustifolius25.1422.4486.26182forward

Expression of CNT30597159

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MSMRENTSTTLVELEIMHTALCTLARSPPGTTLGGW*

>peptide 2 (54 aa)
MPHLNPVGHQSTNWIVRFVLMHAMYLPWRGSHLAIMEDGSKALLVISATESCSW*

Sequence

>CNT30597159
CAAACTGATAGATAGAAGCCCACACGGGCAGATCATAGGATAGCAGCAGTAATCAGGCACATTGCCAAGGCAGCAGGAACCCTGAACCACCCTCTAGTAC
TCGTCACCCTCATCACCCTCGTCACCGTCATCGAACTCGGAGCCGACCTCCTCGTAGTCCTTCTCCAGCGCGGCGAGGTCGAACTTGATGTCGATGCGGG
AGAACACCTCGACGACGCTGGTGGAGTTGGAGATCATGCACACGGCCCTCTGCACCTTGGCCAGGTCGCCCCCCGGGACGACGCTGGGCGGCTGGTAGTT
GATGCCGCACTTGAACCCCGTGGGGCACCAGTCCACGAACTGGATTGTGCGCTTCGTCTTGATGCACGCCATGTACTTGCCGTGGCGCGGGTCACACTTG
GCCATCATGGAGGACGGCTCGAAGGCGCTGTTGGTGATCTCCGCCACGGAGAGCTGCTCGTGGTAGGCCTTCTCGGCCGAGATCACCGGGGCGTAGGAGG
AAAGCATGAAGTGGAGACCTGAGGGGACGGGTACACGGTGAACCCAAGCTTGGACTTCTTGCCATAGTCCACAGAGAGACGCTCAAGGAGAAGGGAACCG
AGACCAGAGCCCGTTCCTCCTCCAACAGCGTTGAACACAAGGAAGCCTTGGAGACCAGTGCAGTTGTCAGCAAGCTTCCTGATGCGGTCAAGGCACAGAT
CAACAATCTCCTTGCCAACTGGAA