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Detailed information on CNT30597158


BLAST search results

BLAST vs Swiss-Prot:
sp|P51414|RL261_ARATH, E-value = 3e-55

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690207Oryza meridionalisOryza sativa35.4276.6695.47243forward
CNT30522907Oryza meridionalisSetaria italica39.6548.1489.71272forward
CNT30536141Oryza meridionalisEucalyptus grandis28.8654.5582.32198forward
CNT3044269Oryza meridionalisPrunus dulcis22.7426.1383.97156forward
CNT30181670Oryza meridionalisSecale cereale37.0388.8189.76254forward
CNT3082886Oryza meridionalisBrassica juncea21.4357.285.71147forward
CNT30230907Oryza meridionalisAnanas comosus23.7654.8888.34163forward
CNT30714885Oryza meridionalisMalus domestica golden29.8842.0986.83205forward
CNT30720826Oryza meridionalisTriticum spelta48.2555.5488.52331forward
CNT30355705Oryza meridionalisLactuca sativa32.0760.2779.55220forward
CNT30371509Oryza meridionalisOryza glumipatula54.5264.5997.06374forward
CNT30105031Oryza meridionalisOryza longistaminata51.7546.0498.59355forward
CNT30149302Oryza meridionalisBrachypodium distachyon52.0459.790.2357forward
CNT30115704Oryza meridionalisOryza nivara17.9336.3997.56123forward

Expression of CNT30597158

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MMMIIIGETVRTERKGISPSSLIDLLERGWPCGPCRA*

>peptide 2 (29 aa)
MITTKMRPFSITFERSLSMSNQTCNEFSS*

>peptide 3 (60 aa)
MERTLYLWRSSVESAADMRTRRTDDGAVKCAFRHLRRELVTRGLRFMAAAAAEGVVVLGFS

>peptide 4 (38 aa)
MSSVLDLSKSQGIRLDPHKVPKLTLTNSFIRDKVADFR*

>peptide 5 (55 aa)
MALRSLSSLSLVTTTLEGWIPTLTVDPFTFSLVMRSTWITHRRRYTCTTLPSRPL*

Sequence

>CNT30597158
ATGATAACAACAAAAATGAGACCATTCAGCATAACATTTGAACGTTCACTAAGCATGAGCAATCAAACATGTAATGAGTTCAGTTCTTGATCTATCAAAA
TCCCAAGGCATCAGACTAGATCCACATAAGGTTCCAAAACTCACGTTGACAAACAGTTTCATCAGGGATAAAGTAGCAGATTTCAGGTAGCATTAAAATT
AACTAGATGATGATGATAATAATAGGAGAGACGGTACGAACAGAGAGGAAAGGGATATCTCCCTCGAGCCTAATCGATCTCCTGGAGCGAGGATGGCCTT
GCGGTCCTTGTCGAGCTTGAGCTTGGTGACGACCACCTTGGAGGGGTGGATCCCGACGTTGACGGTGGACCCGTTCACCTTCTCCCTGGTGATGCGCTCG
ACGTGGATCACCCACCGGCGGCGGTACACCTGCACCACCTTGCCCTCGCGGCCCTTGTAGCTCCCCCTCACCACCTGCACCTCGTCGTCCTTGCGGACGG
GGATGGAGCGGACGTTGTACTTGTGGCGGAGCTCGGTGGAGAGCGCGGCGGACATGAGGACGCGGCGGACGGACGACGGCGCCGTGAAGTGCGCCTTCCG
GCACTTGCGCCGGGAGCTCGTCACGCGCGGGTTGCGCTTCATGGCGGCGGCGGCGGCGGAGGGGGTGGTGGTGCTAGGGTTTTCGG