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Detailed information on CNT30597157


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT001610, E-value = 6e-133

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696753Oryza meridionalisOryza sativa13.0223.1488.8990forward
CNT30371230Oryza meridionalisOryza glumipatula36.3247.4593.63251forward
CNT30107369Oryza meridionalisOryza longistaminata11.8730.691.4682forward
CNT30102367Oryza meridionalisOryza rufipogon20.9811.6787.59145forward
CNT30604835Oryza meridionalisOryza punctata13.0235.2988.8990reverse complement

Expression of CNT30597157

Peptides detected in this lncRNA

>peptide 1 (37 aa)
IRHHTPQGPNRQRQALPQLAKPSTSQVPNLMTSTTRD*

>peptide 2 (48 aa)
MKPEEVADPSEDQDPQNYEQGKSSLFLVHIDPNCGIMLFTNKITCNDKH

Sequence

>CNT30597157
ATAAGGCACCACACCCCTCAAGGCCCCAACAGGCAACGACAAGCACTCCCACAGCTAGCCAAGCCCTCCACATCCCAAGTTCCTAACCTGATGACCTCCA
CCACGAGAGATTAACCAACCAGCTGCTCGTCGAGGTCCAACCCGCAGCTAGCTCAGCCGGCGGCCGGCGAGCACAACGTGGTGGGCTCGCACTCGCGCAC
CACCTACCGGCGCGGCGGATGCGCGGAGCTAGCTAGCTAGCGTTGCCCCGGCCTGTCTCTGCCACCGCTCGTCGCCGCCTGGCCGGCCGGCCTGTAGATC
GTCGCCAACCCGAGCACGCGCGCGCGCGCGCGTACGCCGTCTGCCGAGACTCCGACTTCGACGACGTACGGCCACCTCCTCCCCCAACGAATTAGCCACA
CGGAAGGGCAAGTTTTTTAATTAAGGGGTAAAGTCCATCTTGCTCTCCCAATATGGCAAAGACAAAGAAAAAGAAGAAGAAAAAAAAACCAAAGCTTACT
TTTGAATAATTGGATTGGACAGTCATAGGAAAGAAGAAATAAATGAAGCCCGAGGAAGTTGCGGATCCGAGCGAGGATCAAGACCCACAGAACTACGAGC
AAGGCAAGTCATCATTATTCCTTGTACATATTGATCCTAATTGCGGAATTATGTTGTTTACAAATAAAATTACATGCAATGATAAACATCC