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Detailed information on CNT30597117


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697916Oryza meridionalisOryza sativa64.0644.6282.76319forward
CNT30555885Oryza meridionalisOryza glaberrima71.2932.6392.39355forward
CNT30371435Oryza meridionalisOryza glumipatula56.6381.9887.23282forward
CNT30104670Oryza meridionalisOryza rufipogon68.0757.5682.6339forward
CNT30578263Oryza meridionalisOryza barthii71.2934.8791.83355forward
CNT30118004Oryza meridionalisOryza nivara23.2931.4487.07116forward

Expression of CNT30597117

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MVQTQPLALSGTRTPRKGAKRTRRTHKKKKAS*

>peptide 2 (54 aa)
MRVCVIIENKHVVQGVASTYMHVDGTNSTSSSLWYTYPSKRSKTYETNTQEEES*

>peptide 3 (48 aa)
IDRASSIYKNVYVGTKKSYACMCNNRKQARSTRSSKHVHACRWYKLNL*

Sequence

>CNT30597117
GATAGATCGAGCGAGCTCGATCTACAAGAATGTATATGTAGGTACCAAAAAGAGCTATGCGTGTATGTGTAATAATCGAAAACAAGCACGTAGTACAAGG
AGTAGCAAGCACGTACATGCATGTAGATGGTACAAACTCAACCTCTAGCTCTCTCTGGTACACGTACCCCTCGAAAAGGAGCAAAACGTACGAGACGAAC
ACACAAGAAGAAGAAAGCTAGCTAGCCTGACCGGCCGGGCCGATCAACCATGGATATGCACACACATGCATGCATGGTGATTGATCGACCTTAGCTAGCT
CATCTTTTTATTCCAGAATACGTACAGATACTACTAATATTGGATACAGAATTCGATCGGCTCCACACATCGACCCACCGTCGCGCTTCTGTATACTAAT
ATTGGATACAGAATTCGATCGGCTCCACACATCGACCCACCGTCGCGCTTCTGTATACATATAAATGATCCATCCGATCGATAGCTCAGCTCACCCTG