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Detailed information on CNT30597100


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9XF89|CB5_ARATH, E-value = 4e-56

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697233Oryza meridionalisOryza sativa51.43100.2797.09378forward
CNT30677042Oryza meridionalisSetaria viridis18.529.3188.97136forward
CNT30555350Oryza meridionalisOryza glaberrima59.8677.1996.82440forward
CNT30439442Oryza meridionalisAegilops tauschii16.8741.6195.16124forward
CNT30249379Oryza meridionalisAvena sativa22.4541.5696.36165forward
CNT30664041Oryza meridionalisTriticum dicoccoides16.8733.0798.39124forward
CNT30371256Oryza meridionalisOryza glumipatula62.7242.196.96461forward
CNT30481599Oryza meridionalisChara braunii13.7422.7587.13101forward
CNT30104243Oryza meridionalisOryza rufipogon62.3184.8197.6458forward
CNT30578138Oryza meridionalisOryza barthii49.2543.1596.96362forward
CNT30117952Oryza meridionalisOryza nivara62.7237.0996.96461forward

Expression of CNT30597100

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MKNPSMENMASRPFLISFTFSSAAWSGSLASPSGLMGMLLPK*

>peptide 2 (78 aa)
GNHSAMSTMMKTTSRQFTQVANISQPQIQTLGPSYQKIRMNRFFKSISKLDDNLHVHLTHSSTLLKLVPPSRVKLKLT*

>peptide 3 (51 aa)
KPFSNVNDDENHFETIYSGSKYFSATNPNTWSFLSEDQNEQVFQIHLQTRR*

Sequence

>CNT30597100
GGAAACCATTCAGCAATGTCAACGATGATGAAAACCACTTCGAGACAATTTACTCAGGTAGCAAATATTTCTCAGCCACAAATCCAAACACTTGGTCCTT
CCTATCAGAAGATCAGAATGAACAGGTTTTTCAAATCCATCTCCAAACTCGACGATAATTTACACGTACATTTAACACATTCTTCCACCCTTCTCAAACT
TGTCCCTCCTTCCCGGGTAAAATTAAAATTAACTTGAGGCCAGCTAGCGTCGCCGGCGGCGAGATGTTTACAGGCTGGGCGTCCTCTCGGCGGCGCCGGA
GATGACGGTGAGCAGGTTCTCGACGGGGCCCTCGCCGGTGACGTAGGCCTGGATGAAGAACCCCAGCATGGAGAACATGGCCAGCCGCCCGTTCTTGATC
TCCTTCACCTTCAGCAGCGCCGCCTGGTCCGGGTCGCTCGCCAGCCCCAGCGGGTTGATGGGGATGCTGTTGCCGAAGTAGTTGAGGGTGTTGCCGTCCA
GGAGGAGGGCGCCGGTCTGCATATACCATGAGTGAGTTCACTTCAGAGATTCAGGTATTGAGCTTGAGTGATCAGTGAATTAGCTGAATTGCCGATGATC
AGTGGCTAGTACACGCACCTTGAACCAGACGGCCTCGGGGCCGCAGTTGGCGCCGAACTTGTTGCAGGCCTCGGGGATGATGAACCCGGCAGCGCCGAGC
ATCGCCCACCTGGCATGGATCAGCTCATAGGCCTG