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Detailed information on CNT30597090


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673517Oryza meridionalisSetaria viridis20.7939.0986.3295forward
CNT30555389Oryza meridionalisOryza glaberrima38.5125.2998.3176forward
CNT30138306Oryza meridionalisLolium perenne38.2928.1488175forward
CNT3012274Oryza meridionalisZea mays41.7926.2484.29191forward
CNT30353380Oryza meridionalisEragrostis tef27.1321.5386.29124forward
CNT30367618Oryza meridionalisSorghum bicolor38.5124.7982.39176forward
CNT30118065Oryza meridionalisOryza nivara44.244.7997.52202forward
CNT30551970Oryza meridionalisOryza brachyantha43.9822.0292.54201forward

Expression of CNT30597090

Peptides detected in this lncRNA

>peptide 1 (39 aa)
QLRGMLIYSQSLQSCCFSHQRHLMLLIPEKLCPSWLHAS*

>peptide 2 (42 aa)
TAKRNVDLFSISPIMLLLTSETLDVVDPREVVSFLASRFMRL*

Sequence

>CNT30597090
ACAGCTAAGAGGAATGTTGATCTATTCTCAATCTCTCCAATCATGTTGCTTCTCACATCAGAGACACTTGATGTTGTTGATCCCAGAGAAGTTGTGTCCT
TCTTGGCTTCACGCTTCATGAGACTCTGATAAAACTCTACAACCTCTGGAGCACGGTGTACCTTGTCACCACCAGCAAGATTCCTAGGTAGGGAACCAGG
GGGTGGTGGTGGTGGTGGAGGAGGTGCACCTGGCGGGCGTGGCGGTGGTGGAGGTAACGCACTTGCAGTGTTGGCAGTGGCTGATGGTGCAGGAGGTGGC
CTAGGAACTCTTGGAGCTCTCTTCTCAATATTTGCAAGTTTCAGTTGTGTCACAACTAGAGGGTTATTCTGGTTATCACTAGATTGGTCACTGGATTCAA
CATTAGCTGTAGAAGCCTTCTCCTTTATTTGAGCAAGTTTTGGAGGGAGTGCAGATC