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Detailed information on CNT30597075


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30555490Oryza meridionalisOryza glaberrima55.5973.5486.69353forward
CNT3067339Oryza meridionalisLeersia perrieri25.8313.691.46164forward
CNT30371235Oryza meridionalisOryza glumipatula34.3326.294.95218forward
CNT30110783Oryza meridionalisOryza longistaminata53.2352.8186.98338forward
CNT30578158Oryza meridionalisOryza barthii55.5935.886.69353forward
CNT30550980Oryza meridionalisOryza brachyantha25.6710.0293.87163forward

Expression of CNT30597075

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MDKLVAWFCYTNFCSLLWNYCLILEAEYLRLSVTIV*

>peptide 2 (83 aa)
GGSVSRAATTMTSATMTAAGGGGSRAVASGGEVGRCVDDDDLGDDDGGGRRRRGRARRIRRGGERRRRAWHHLPQVARTLRKE*

>peptide 3 (38 aa)
RWIRLARGDDDDLGDDDGGGRRRIQSGGERRRGRALRR*

>peptide 4 (91 aa)
MTTTSATTTAAGGGGEVGRGGSGAVASGGGELGTIYLRLLEPCARSDHLMQWISPESPHQIRKQHQVLLVWREPEPGTSIFLVLQVFSGVC*

Sequence

>CNT30597075
CGGTGGATCCGTCTCGCGCGCGGCGACGACGATGACCTCGGCGACGATGACGGCGGCGGGCGGCGGCGGATCCAGAGCGGTGGCGAGCGGCGGCGAGGTC
GGGCGCTGCGTCGATGACGACGACCTCGGCGACGACGACGGCGGCGGGCGGCGGCGGCGAGGTCGGGCGCGGCGGATCCGGCGCGGTGGCGAGCGGCGGC
GGCGAGCTTGGCACCATTTACCTCAGGTTGCTAGAACCCTGCGCAAGGAGTGACCATCTAATGCAATGGATATCACCAGAATCTCCACACCAGATCCGTA
AACAGCATCAGGTCCTGCTGGTGTGGAGGGAACCTGAACCTGGAACTTCGATTTTTTTGGTGCTGCAAGTGTTTTCAGGTGTTTGTTGAACCAAAACTGG
GTATGCTTGAATGTTGTGTGATTCTTGAACATGGACAAGTTGGTAGCTTGGTTCTGCTACACAAATTTTTGTAGCTTGCTGTGGAACTATTGTTTGATTC
TGGAAGCAGAGTATTTGAGACTATCAGTTACTATTGTTTGAATTCTATTGTATTTTGATTGTATCTGTTATTAGTTGAATCTAAGATGGTATGGTTTGAA
TCTGAAATGGTATAAGAAATTGGATTGAATTTGGT