« Back to Oryza meridionalis search


Detailed information on CNT30597047


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697306Oryza meridionalisOryza sativa49.3831.2797.92480forward
CNT30676931Oryza meridionalisSetaria viridis17.3935.9689.94169forward
CNT30297329Oryza meridionalisTriticum aestivum17.3972.5391.72169forward
CNT30392715Oryza meridionalisTriticum turgidum17.3973.1690.53169forward
CNT30258087Oryza meridionalisAvena sativa10.0820.9492.8698forward
CNT30663719Oryza meridionalisTriticum dicoccoides17.5965.5290.64171forward
CNT306434Oryza meridionalisZea mays10.640.8790.29103forward
CNT30610790Oryza meridionalisGossypium raimondii10.0832.0385.7198forward
CNT30216367Oryza meridionalisKalanchoe fedtschenkoi10.9129.2887.74106forward
CNT3068331Oryza meridionalisLeersia perrieri16.8721.3885.37164forward
CNT30345065Oryza meridionalisEragrostis tef10.4920.8688.24102forward
CNT30371334Oryza meridionalisOryza glumipatula41.9848.1797.06408forward
CNT30570125Oryza meridionalisVitis vinifera5.9726.0187.9358forward
CNT30104230Oryza meridionalisOryza rufipogon41.9816.5796.81408forward
CNT30578122Oryza meridionalisOryza barthii41.9851.7896.81408forward
CNT30117945Oryza meridionalisOryza nivara39.6143.9599.48385forward
CNT30604735Oryza meridionalisOryza punctata44.5551.3679.91433forward
CNT30557055Oryza meridionalisPanicum hallii17.3922.6286.39169forward
CNT3040014Oryza meridionalisMarchantia polymorpha8.1326.2589.8779forward

Expression of CNT30597047

Peptides detected in this lncRNA

>peptide 1 (42 aa)
ETQPYIYTQNFAVTKSIHRPHIQVVYRFVYTQGYCRGKTRGM*

>peptide 2 (52 aa)
RNTTIYIYAKLCSNQIDSQATHTGSIQIRLHTRLLQRQNTRYVISNALERFL*

>peptide 3 (71 aa)
MLAASSGKRFIMFLQFCSVIKFDMYLRNGGVAGKAPGSLLHGEFRWAVGDADNSAPEDEELHVRHWNDIDQ*

>peptide 4 (43 aa)
MQYSFNFVHRSQPVTVTTHWLQCPRGTSSIAVAVVRSSSRFTV*

>peptide 5 (48 aa)
MLTVEEDLRLDNRHQPVVLVLFKKIVHACSIIRKKIYYVLAVLFCNQV*

Sequence

>CNT30597047
CAGAAACACAACCATATATATATACGCAAAACTTTGCAGTAACCAAATCGATTCACAGGCCACACATACAGGTAGTATACAGATTCGTCTACACACAAGG
TTATTGCAGAGGCAAAACACGAGGTATGTAATATCAAACGCTCTAGAAAGATTCCTGTGATGAAATACATGATGAACCACGTATGTTCTCAAGGTAAAAT
TAATTAATGCAGTATAGTTTTAACTTTGTCCATCGATCTCAACCTGTAACTGTGACGACACACTGGCTACAGTGCCCTCGAGGTACTAGCAGTATAGCAG
TAGCTGTAGTACGTAGCAGCAGCAGGTTCACTGTTTGATTGGATTGGATCGGATTAGTAGACGTAGTTCTTGACGAACATGCCCTCCTTGGCCTCGGCGG
GGTGGCCCTGTCCTTGCACTCGGCACCGGGTGTCACCATGCTTGGCTTGAGGAGGATGCCCTCGAACATCACATTGTTCTCGGCCATGTAGAAGAAGGTC
CTGTCGATGCCATGCTCACCGTCGAGGAGGATCTCAGGCTCGACAATCGGCACCAGCCCGTTGTCCTAGTATTATTCAAGAAAATTGTTCATGCTTGCAG
CATCATCAGGAAAAAGATTTATTATGTTCTTGCAGTTTTGTTCTGTAATCAAGTTTGATATGTACCTGAGAAATGGCGGCGTAGCGGGCAAGGCCCCAGG
CAGCCTCCTTCACGGCGAGTTCAGATGGGCCGTTGGGGATGCTGACAACAGTGCGCCTGAAGATGAAGAACTTCATGTCAGACACTGGAATGATATCGAC
CAATGACAGTATGTGAAAGGTAACTGGTCATTTTATTTGTAGGTGAAAATTTTTCCTCACCACTTGGCGAAGCGAGCGCCCTGCTGGTAGTATGCCGCCT
CGCGCGAGGCAAGGCCGTCGAGACCTTGGCACCATGACTCGTTGTTGGAGCCAGCAAGGGGCACAAGACCCT