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Detailed information on CNT30597018


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696538Oryza meridionalisOryza sativa88.2496.2990.69623forward
CNT30555266Oryza meridionalisOryza glaberrima87.8295.0992.9620forward
CNT30371149Oryza meridionalisOryza glumipatula90.9388.9295.48642forward
CNT30103764Oryza meridionalisOryza rufipogon97.4589.5891.13688forward
CNT30577872Oryza meridionalisOryza barthii96.0390.5293.22678forward

Expression of CNT30597018

Peptides detected in this lncRNA

>peptide 1 (57 aa)
MVQLQSVLSYHVRHHRRLHLHDGVPLKMEVSDKEQQARLILTVYKSSLKFKNCLGNT*

>peptide 2 (70 aa)
MTKQRPSVQSLMVIVLVFLVVLAMPTALLGLGAGRLVLGDSSKAQSPGRHGSIAICAELPCPPPPPPPSP*

>peptide 3 (33 aa)
MNLVSWEASSGLFYQELRGFYCRNSSNLEVGSM*

Sequence

>CNT30597018
TTATTACTGAGAGATAAATTAAAGTGAAGGTTTATCAGTATTCTAGAATACAACAGTGAAAGTAAGAAACATAGAGATGACAAAGCAAAGGCCATCTGTT
CAGTCTCTTATGGTGATTGTGCTAGTATTTCTAGTGGTTCTTGCTATGCCAACTGCTTTGCTGGGACTTGGTGCAGGAAGGCTGGTTTTAGGTGATTCGT
CCAAAGCCCAATCGCCGGGAAGGCATGGTTCAATTGCAATCTGTGCTGAGCTACCATGTCCGCCACCACCGCCGCCTCCATCTCCATGATGGAGTTCCTT
TGAAAATGGAGGTTTCTGACAAAGAACAACAAGCTAGGTTAATACTTACAGTTTACAAGTCTAGTTTGAAGTTCAAGAATTGTCTAGGAAACACCTAGCT
AGGTTAATGCTGGTCATGCTAAATGCTGCCTGTTAATTGGCACAAGTATGTAAGTAATACTAATTTCACTCAAGTGAAATAAACATGTAATGTTATACAG
TACTTCAAGCTCATCTATATTTATGTGTTAAATAAATTAAGAGATGAATTTGGTGAGCTGGGAAGCCTCTTCGGGTTTGTTTTATCAGGAGCTACGAGGC
TTTTATTGCAGAAATAGTTCGAACTTGGAAGTTGGAAGCATGTAATCTGTACCAAGTTTTACAAGCCTTTTTCTTGTATTATATATTAATTTTGTCTAGC
AAACAA