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Detailed information on CNT30596989


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696775Oryza meridionalisOryza sativa77.487.594.6315forward
CNT30555251Oryza meridionalisOryza glaberrima101.23101.2390.05412forward
CNT30109832Oryza meridionalisOryza longistaminata22.1127.4491.1190forward
CNT30575314Oryza meridionalisOryza barthii26.5410.6893.52108forward
CNT30115936Oryza meridionalisOryza nivara26.5414.0893.52108forward

Expression of CNT30596989

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MAFTYRLFLIFVTMEIVMLIVRSAASGSSAAIDGATDPRCPPCKCCKCGCRV*

>peptide 2 (45 aa)
MFYIVIIVITKVSPFSGSYRWLQLLINSDIPDDDTYAYIFVIELYE

>peptide 3 (36 aa)
MEPQIQGVHHVNAANAAAESDYPRSTFLIISNLSVN*

Sequence

>CNT30596989
GAAAGATTAAGCTAGCGGTGAAGGCGGAGATATTCATTTCTTCCCCTATTTGATCATGGCTTTTACATACCGCCTGTTTCTTATATTTGTGACGATGGAG
ATCGTTATGCTTATTGTCAGAAGCGCGGCATCAGGTTCATCGGCAGCCATAGATGGAGCCACAGATCCAAGGTGTCCACCATGTAAATGCTGCAAATGCG
GCTGCAGAGTCTGACTACCCTCGTTCCACTTTTTTAATTATCAGTAATTTATCTGTGAATTAGAGCTATGTTTTATATTGTAATTATTGTAATTACAAAA
GTTAGTCCATTTAGCGGAAGCTACCGATGGCTGCAGCTATTGATAAACTCAGACATACCAGACGATGACACATATGCATATATATTTGTTATCGAGCTTT
ACGAGAA