« Back to Oryza meridionalis search


Detailed information on CNT30596981


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30197932Oryza meridionalisPisum sativum38.265.2283.19119forward
CNT30153785Oryza meridionalisPrunus persica38.263.6581.51119forward
CNT30150293Oryza meridionalisBrachypodium distachyon53.389.8589.16166forward
CNT30116859Oryza meridionalisOryza nivara73.9555.1684.78230forward

Expression of CNT30596981

Peptides detected in this lncRNA

>peptide 1 (33 aa)
HISSSCSQTRLVDPFDFAAICTYLSNFRSVRRS*

Sequence

>CNT30596981
AACACATTTCAAGTAGTTGTAGTCAAACCCGACTTGTTGACCCTTTTGATTTTGCAGCAATATGTACATATCTAAGTAATTTTCGTTCTGTCAGACGATC
ATGAAAACGAAATTTCCGTTTTTCTTCTAGACGAATACGATATTGCGATCTTTTCCCAGAACGCAATTGGTTTTTAAAGATACTTCAGGATCTAGGTCTT
TTACTAGTTAGTCCCGGTAAAGCTCCCAAACGGCATATTTTTTCGAAAAGAGGTCCTCGGTAACGAGACATAAAGACTCCTTTTTTTCTTTTTTTTTCAT
TTTCACACGAA