Detailed information on CNT30596960


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693452Oryza meridionalisOryza sativa34.1624.9596.64357forward

Expression of CNT30596960

Peptides detected in this lncRNA

>peptide 1 (60 aa)
MCGSVHARLCTWACRSRPAVGLGDARQRPSPARIGGNAAAQVTEQVSVEEIRAGRAADFV*

>peptide 2 (69 aa)
KKKKQENRSCSPSRRTSCALPPPLLFLSSPASPLVQPSPVATAVVVHSRSLEGGREGREEQEGRKEXEI*

>peptide 3 (90 aa)
KKRNRRIAPVALAAAPPALCRRRCCSCLRRRRRWCSRRRSPQPSSSTAGRWKEGEKAEKNRKEGKXGKFDRRREIWGIWYLMTSIGMGRK*

>peptide 4 (45 aa)
MHVGLQVPTGSRPGRRKTETESGSDWRQRSCTGDRAGFSRRNQSW*

>peptide 5 (46 aa)
MPLHACVARCMLGYARGLAGPDRQSAWETQDRDRVRLGLAATQLHR*

Sequence

>CNT30596960
AAAAAAAAAGAAACAGGAGAATCGCTCCTGTAGCCCTAGCCGCCGCACCTCCTGCGCTCTGCCGCCGCCGCTGCTGTTCCTGTCTTCGCCGGCGTCGCCG
CTGGTGCAGCCGTCGCCGGTCGCCACAGCCGTCGTCGTCCACAGCCGGTCGTTGGAAGGAGGGAGAGAAGGCAGAGAAGAACAGGAAGGAAGGAAAGAAN
GGGAAATTTGATAGAAGAAGGGAAATTTGGGGAATTTGGTACCTAATGACATCGATCGGCATGGGGCGGAAGTAGCACCCTTGGACTACACATTATTATT
GCACACAACTGAAATTTAGTTTTAGACTATATTTTGTGCTCAGCATAAGTTTTGCATAGAACTTGTAAAGGTCATTTAAGGTTCCGATCCTTATTTTTCA
CGTGGGATTTGTGGAGCTAGGATGGTTTGGATTGTGTGGATTATATCGGTATTACCTTTCTTATAACTGCCTGTCGTGATGTCCGTATTTTTAGGGGAGT
CTCTGCCGAAATTTCCAATAATTTTAGGACTTAGTTTTTGAGCGTATTTTGGTGTGGCATTCTAGGTACGTGGTTACCTGGGGTGTTACAGTAAGTATGC
CGTTGCACGCATGTGTGGCTCGGTGCATGCTCGGCTATGCACGTGGGCTTGCAGGTCCCGACCGGCAGTCGGCCTGGGAGACGCAAGACAGAGACCGAGT
CCGGCTCGGATTGGCGGCAACGCAGCTGCACAGGTGACCGAGCAGGTTTCAGTAGAAGAAATCAGAGCTGGTAGAGCTGCTGATTTTGTTTGAGAGAGAA
AAAGGAAATTGAGGATCGAGTTCTATTGTGAATAGGAGTTCTTACACCTACCTTGAGTAGGAGGTTTATGTAGTATAAATAGATGAGGGGTTGAGGCTTG
AAAATATCGACTTTTGAGAGAGAGAAGTTAAGGTTTACTTCGAGGTTTCAATCCTAATTTGTGAGTTGAGAGAGTTGTGCTTTAGTTGCACTTTGTAAAT
ACATATTGATGCAATAAAGTTGATATACTTTCAAGTGTTTCGTCG