Detailed information on CNT30596955


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696520Oryza meridionalisOryza sativa82.8470.796.4584forward
CNT30555063Oryza meridionalisOryza glaberrima86.18996.05607forward
CNT3068141Oryza meridionalisLeersia perrieri21.4236.2182.12151forward
CNT30106908Oryza meridionalisOryza longistaminata35.8910095.65253forward
CNT30103734Oryza meridionalisOryza rufipogon77.372.4796.51545forward
CNT30577979Oryza meridionalisOryza barthii81.2871.8995.99573forward
CNT30117704Oryza meridionalisOryza nivara83.5587.7896.43589forward

Expression of CNT30596955

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MFHLHAHLHYHLSRHETWAKTKLCSRPSLPLLQQGILSQIWLHY*

>peptide 2 (34 aa)
MLKAFASLAPAGDFEPDMVTLLGKRAITFVPREL*

>peptide 3 (82 aa)
MNKRRSSAHSLILVTVLAVLIVLAMPTALLGLSIGRRALGDPHGAQSTAAMQQDAQAVGPACNTNDPNVPSPCPPPLSPLSP*

>peptide 4 (32 aa)
MPTSTITSLAMKPGQKQSYAQGLRFPCSSRGF*

>peptide 5 (30 aa)
MLYLVLYGACTSIYSLRILIYNAIDFLTNV*

Sequence

>CNT30596955
CTTATCCTTTGAGAGAATTTCTTTGGATGGTCGGTATAAGAGATAGCAAGAAGGGAAGCTAAAACAATCCAGCTGAGCATAAGGTGAAGGGTAGATAAAA
TACAACGGTGAAGTTAAAGAGAAACAGAGATGAACAAGCGAAGGTCCTCTGCTCACTCCCTTATCTTGGTTACTGTGCTAGCAGTTCTAATTGTTCTTGC
TATGCCAACAGCTTTGCTGGGGCTCAGTATAGGGAGGCGTGCTTTAGGTGATCCACATGGAGCTCAATCCACAGCTGCCATGCAACAAGATGCTCAGGCC
GTAGGTCCTGCGTGCAACACAAACGATCCGAATGTTCCATCTCCATGCCCACCTCCACTATCACCTCTCTCGCCATGAAACCTGGGCAAAAACAAAGCTA
TGCTCAAGGCCTTCGCTTCCCTTGCTCCAGCAGGGGATTTTGAGCCAGATATGGTTACACTATTAGGTAAGAGAGCTATAACGTTTGTACCACGAGAACT
ATGACAAGTAATAAACGTATAGATTTACCAACATCTGAATCGTGACGAGAATTCGTACGTTCTTTCAGAGAATGTTGTACCTTGTGTTATATGGTGCATG
TACCTCTATATACTCCCTCCGTATTTTAATATATAACGCCATTGACTTTTTAACCAACGTTTGATCATTCGTTTTATTCAAAATTTTTATACAAATATAA
AAATA