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Detailed information on CNT30596930


BLAST search results

BLAST vs Swiss-Prot:
sp|Q01595|CCDP_MAIZE, E-value = 1e-39

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691791Oryza meridionalisOryza sativa53.3371.9594.92472forward
CNT30664801Oryza meridionalisTriticum dicoccoides8.3623.6489.1974forward
CNT30369848Oryza meridionalisOryza glumipatula59.2164.9393.32524forward
CNT30116404Oryza meridionalisOryza nivara59.2164.3793.32524forward

Expression of CNT30596930

Peptides detected in this lncRNA

>peptide 1 (82 aa)
MLRLMPRMLALMAVQRQTAASRSTRPPSNGQHCSLSGTPIFSFSRLSTLAHTPSFSASIGHLFPPPPPPDGGGITGGVGVGQ*

Sequence

>CNT30596930
CGGAAAACAGGCTTAATTAATTTGTTAATGAGCAGATAGATAGATAGATAGATAGATAGTAGCACAAGTAGTACACTGGAGGAAACTTTTATTTGACAGT
ACGCATTAAAATAACAAGATACATAGATGATCGATCTGATGATCAATCACTGATCGATAGATCGAGATAAAAGTACGTAGAGTACAGTTGATATATATCG
ACATATATATGTATGACAACTGCAACACACAGTAATACGCGACTAAGCCATGCATGCAAAGCTTAAGCCTTAGCGGTAGCTAGGGTTGTGGTGGTAATGA
AGAATTAATCAGAGTGGGCAGGAGAAGTCGGAGGGGCAGGTCTTGTGGCAGTAGTTGAGAAGGAGAGAGAGATCGACGGGGATGTTGAGATTGATGCCGA
GGATGTTGGCCTTGATGGCGGTGCAGAGGCAGACGGCGGCGTCGAGGTCGACGAGGCCACCCAGCAACGGGCAGCACTGCTCGCTCTCCGGCACGCCGAT
CTTCAGCTTCAGCAGGTTGAGCACGTTGGCGCACACGCCCAGCTTCAGCGCGTCGATCGGGCACTTATTCCCTCCACCGCCACCACCCGACGGCGGCGGC
ATCACCGGCGGGGTCGGTGTGGGGCAGTAGGGCTCGCATGCCTGCACTACTGCACCCATCTGCATGGTGATGAGCACATTGAGGGCAAGGAACAGCGCAC
AGACCTGCACCTTCTTCTTGCCGCCCATCGTCTTAATTAATTAAGTAGCTACTACTGCTTAGCAATCAGCAGCTTCTGCCTATATATAGCTCAGCTCGTT
CGATCGATCAGAAGAAGAAGCTGGAGCTGGAGATGGAGCTGCCTTTTGATATTAATTTGCTAGCTAGCTCGATCGGCCGGGATGC