« Back to Oryza meridionalis search


Detailed information on CNT30596926


BLAST search results

BLAST vs Swiss-Prot:
sp|Q01595|CCDP_MAIZE, E-value = 8e-34

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691814Oryza meridionalisOryza sativa49.5371.9593.86472forward
CNT30392194Oryza meridionalisTriticum turgidum8.521.0988.8981forward
CNT30589645Oryza meridionalisMusa acuminata11.6520.4887.39111forward
CNT30685047Oryza meridionalisTriticum urartu25.646.1287.3244reverse complement
CNT30575711Oryza meridionalisOryza barthii54.9872.6892.37524forward
CNT30116276Oryza meridionalisOryza nivara54.9864.3792.37524forward

Expression of CNT30596926

Peptides detected in this lncRNA

>peptide 1 (39 aa)
EVELKHACIYISLIYGMKEEIDTYDDLNKEQMIVLDIDR*

>peptide 2 (80 aa)
MLMPRMLALMAVQRQTAASRSTRPPSSGQHSSLSGTPTLSFSRLSTLAHTPSFSASIGHLFPPPPPPDGGGITGGVGVGQ*

Sequence

>CNT30596926
TGGAAGTGGAACTGAAGCATGCATGCATATATATCTCATTAATTTACGGGATGAAGGAGGAAATTGATACATATGATGATTTGAACAAGGAACAAATGAT
AGTATTAGACATAGATAGATAGATATATAGTTGTACTAGTACACTGGAGGAAACTTTTATTTGACAGTACGCATTAAAATAACAAGATACATAGATGATC
GATCTGATGATCAATCACTGATCGATAGATCGAGATAAAAGTACGTAGAGTACAGTTGATATATATCGACATATATATGTATGACAACTGCAACACACAG
TAATACGCGACTAAGCCATGCATGCAAAGCTTAAGCCTTAGCGGTAGCTAGGGTTGTGGTGGTAATGAAGAATTAATCAGAGTGGGCAGGAGAAGTCGGA
GGGGCAGGTCTTGTGGCAGTAGTTGAGGAGGAGGACGAGGTCGACGGGGACGTTGATGTTGATGCCGAGGATGTTGGCCTTGATGGCGGTGCAGAGGCAG
ACGGCGGCGTCGAGGTCGACGAGGCCACCCAGCAGCGGGCAGCACTCCTCGCTCTCCGGCACCCCCACCTTGAGCTTCAGCAGGTTGAGCACGTTGGCGC
ACACGCCCAGCTTCAGCGCGTCGATCGGGCACTTATTCCCTCCACCGCCACCACCCGACGGCGGCGGCATCACCGGCGGGGTCGGTGTGGGGCAGTAGGG
CTCGCATGCCTGCACTACTGCACCCATCTGCATGGTGATGAGCACATTGAGGGCAAGGAACAGCGCACAGACCTGCACCTTCTTCTTGCCGCCCATCGTC
TTAATTAATTAAGTAGCTACTACTGCTTAGCAATCAGCAGCTTCTGCCTATATATAGCTCAGCTCGTTCGATCGATCAGAAGAAGAAGCTGGAGCTGGAG
ATGGAGCTGCCTTTTGATATTAATTTGCTAGCTAGCTCGATCGGCCGGGATGC