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Detailed information on CNT30596913


BLAST search results

BLAST vs Swiss-Prot:
sp|P12332|CB21_SILLB, E-value = 1e-69

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30362240Oryza meridionalisSorghum bicolor47.0244.991.21387forward
CNT30369182Oryza meridionalisOryza glumipatula4847.0296.2395forward

Expression of CNT30596913

Peptides detected in this lncRNA

>peptide 1 (31 aa)
YVFRLYYIIRMVIFWDRWSICFQPNRDDQIR*

>peptide 2 (37 aa)
MIKSANQNNGQISTKTISWETNKIIIAKTSSSSSSSS*

Sequence

>CNT30596913
TATGTATTTAGACTATACTACATAATCAGAATGGTTATATTTTGGGATCGATGGAGTATTTGTTTCCAACCTAATAGAGATGATCAAATCCGCTAATCAG
AATAACGGACAGATAAGTACCAAGACCATCAGTTGGGAAACGAATAAAATCATTATTGCAAAAACATCATCTTCATCTTCTTCTTCTTCTTAGTGTACAC
AACACCAACTCGATCATCATCTCGTCGCACCAAACCCATCTTCCCCAACCCAAAGACAACGAACTCGCTGGCCACAAATCCATTTCAACTACGCTCCCCT
CTCACTTGCCGGGGACGAAGTTGGTGGTCGGCGAGGATGCTCTGCGCGTGGATCAGGCTCGGGTTGCCGAGGTAGTCGAGCCCCCCCTCGCTGAAGATCT
GCGAGCCCGCCTTGAACCACACGGCCTCGCCGAACTTGACGCCGTTCCGGGCGAGGAGCTCCGGGAAGACGCAGCCGAGCGCGCCCAGCATCGCCCACCG
GGAGTGGATCACCTCCAGCTCCCGGTTCTTGGCGAACGTCTCCGGGTCGGCGGAGAGCCCCGCGGTGTCCCAGCCGTAGTCGCCCGGGAACTCGCCGGTG
AGGTAGCTCGGCGGCTCGCCGGAGAGCGGGCCGAGGTAGAGGACGCGGTCGGCGCCGTACCACGGGCTCCCCGACGCCGCCGGCTTGGGCTTCGCGGCGG
AGGTCGACGGCGCCGCGCGGGCCATCACCGGGGAGGAGAGCGCCATGGTGGCCGCGGCCATTGATGCACTGAGCTGTGAGAGCTGAGAGAGATGGCGATG
AGCGAGAGTGAGTTGGGAGTTGG