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Detailed information on CNT30596899


BLAST search results

BLAST vs Swiss-Prot:
sp|Q01595|CCDP_MAIZE, E-value = 5e-24

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30248153Oryza meridionalisAvena sativa21.2519.8884.96133forward

Expression of CNT30596899

Peptides detected in this lncRNA

>peptide 1 (82 aa)
MLMPRMLALMAVQRQTAASRSTRPPSSGQHSSLSGTPTLSFSRLSTLAHTPSFSASIGHLFPPPDGDGGDGGGVTGGVGVGQ*

Sequence

>CNT30596899
TGAGCAGATAGATAGATAGATAGATAGATAGTAGCACAAGTAGTACACTGGAGGAAACTTTTATTTGACAGTACGCATTAAAATAACAAGATACATAGAT
GATCGATCTGATGATCAATCACTGATCGATAGATCGAGATAAAAGTACGTAGAGTACAGTTGATATATATCGACATATATATGTATGACAACTGCAACAC
ACAGTAATACGCGACTAAGCCATGCATGCAAAGCTTAAGCCTTAGCGGTAGCTAGGGTTGTGGTGGTAATGAAGAATTAATCAGAGTGGGCAGGAGAAGT
CGACGGGGACGTTGATGTTGATGCCGAGGATGTTGGCCTTGATGGCGGTGCAGAGGCAGACGGCGGCGTCGAGGTCGACGAGGCCACCCAGCAGCGGGCA
GCACTCCTCGCTCTCCGGCACCCCCACCTTGAGCTTCAGCAGGTTGAGCACGTTGGCGCACACGCCCAGCTTCAGCGCGTCGATCGGGCACTTATTCCCT
CCACCCGACGGAGACGGCGGCGACGGAGGCGGCGTCACCGGCGGCGTCGGGGTGGGGCAGTAGGGCTCGCATGCCTGCACTGCAGCCATCTGAATGGAGA
TGACCATGTTCAGAGCAAGGACGAAC