Detailed information on CNT30596895


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6ENI2|RPOC2_ORYNI, E-value = 4e-156

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696665Oryza meridionalisOryza sativa31.696.35100359forward
CNT30703171Oryza meridionalisQuercus lobata48.464.6184.34549forward
CNT30197323Oryza meridionalisPisum sativum47.473.7682.12537forward
CNT3082978Oryza meridionalisBrassica juncea20.832.9183.05236forward
CNT3017987Oryza meridionalisZea mays65.1442.1796.75738forward

Expression of CNT30596895

Peptides detected in this lncRNA

>peptide 1 (29 aa)
TLPFDFFFFFILPFHYEISFFSKIKKEPK*

>peptide 2 (58 aa)
MVNSAPIKNPQGPPRILGIRSFQSSILLSRFGDSESIERASKICSTFGRPCVMSLDLAF

>peptide 3 (77 aa)
MSHRNCLLRQNQKKLILYGETKYLSFPTQIVFFLNFEIKVLVLWVTVHKFLESGTNRYNPPQNYVFFQAFQPINTTS*

>peptide 4 (32 aa)
HFLLIFSFFSSYLSITKFLSFRRLRKSRNSLK*

>peptide 5 (42 aa)
MVILMSHRNCLLRQNQKKLILYGETKYLSFPTQIVXXXSDVS*

Sequence

>CNT30596895
CACACTTCCTTTTGATTTTTTCTTTTTTTTCATCCTACCTTTCCATTACGAAATTTCTTTCTTTTCGAAGATTAAGAAAGAGCCGAAATAGCTTGAAATA
AATAATAATTGTTCCGATGGAACCTTCTACATGGTATAAGCATAACCTTAATGAATTAACTAAACTTCTTTTTAAATTAAAATAAAAATAGAAAATCTAA
CCTCTTAGCGTTCTAAGGTCAAAAATCTAGTTTAAAGTAAAAAATCTGCTTTATGTATCCTTAAATCATATAAATGGGGTAAATGGTGATTCTGATGTCT
CATAGAAATTGTTTGTTACGTCAGAATCAGAAGAAACTAATTCTGTATGGAGAAACAAAATATCTCTCATTTCCGACGCAAATAGTTTTNNNNNATTCTG
ATGTCTCATAGAAATTGTTTGTTACGTCAGAATCAGAAGAAACTAATTCTGTATGGAGAAACAAAATATCTCTCATTTCCGACGCAAATAGTTTTTTTTT
TGAATTTCGAAATAAAGGTTCTTGTCTTGTGGGTAACGGTGCACAAATTTTTGGAATCCGGTACCAACAGGTATAATCCCCCCCAGAACTACGTTTTCTT
TCAGGCCTTTCAACCAATCAATACGACCTCGTAAGGCAGCTTTTGCTAAAACTCGAGCAGTTTCTTGAAAACTTGCTTCAGATATGAAACTTTGGGTATT
CAGGGAAACCCTTGTTATTCCCAATAAGATTGCCCGATAATAGATCGATTCATCCAAAGCCCGCCCTGCTCGCTCTGCTCGCAATAGTCCAATTAATTCC
CCAGGTGAAAAAACATTAGACATTCCATCTTCGGAAACCCGCACTTTTGATGTTACTTGGCGTATAATAATCTCTATATGTCTATTATGGATCTGTACCC
CTTGGGATCGATAAACCTTTTGGATCTTATTAACCAAAGAGATACGACTTTGGGCTATGGTTAACTCAGCTCCAATCAAGAATCCCCAAGGACCCCCAAG
AATTCTTGGTATACGCTCATTCCAATCCTCAATTCTCCTTTCGAGATTCGGCGATAGTGAATCAATTGAACGCGCTTCGAAGATTTGTTCTACTTTTGGA
AGACCTTGCGTTATGTCACTAGATCTCGCTTTT