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Detailed information on CNT30596894


BLAST search results

BLAST vs Swiss-Prot:
sp|Q01595|CCDP_MAIZE, E-value = 1e-33

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30369753Oryza meridionalisOryza glumipatula48.7955.494.63503forward

Expression of CNT30596894

Peptides detected in this lncRNA

>peptide 1 (82 aa)
MLRLMPRMLALMAVQRQTAASRSTRPPSNGQHCSLSGTPIFSFSRLSTLAHTPSFSASIGHLFPPPPPPDGGGITGGVGVGQ*

>peptide 2 (43 aa)
MLALMAVQRQTAASRSTRPPSSGQHSSLSGTPTLSFSRSCGSS*

Sequence

>CNT30596894
CGGAAAACAGGCTTAATTAATTTGTTAATGAGCAGATAGATAGATAGATAGATAGATAGTAGCACAAGTAGTACACTGGAGGAAACTTTTATTTGACAGT
ACGCATTAAAATAACAAGATACATAGATGATCGATCTGATGATCAATCACTGATCGATAGATCGAGATAAAAGTACGTAGAGTACAGTTGATATATATCG
ACATATATATGTATGACAACTGCAACACACAGTAATACGCGACTAAGCCATGCATGCAAAGCTTAAGCCTTAGCGGTAGCTAGGGTTGTGGTGGTAATGA
AGAATTAATCAGAGTGGGCAGGAGAAGTCGGAGGGGCAGGTCTTGTGGCAGTAGTTGAGGAGGAGGACGAGGATGTTGGCCTTGATGGCGGTGCAGAGGC
AGACGGCGGCGTCGAGGTCGACGAGGCCACCCAGCAGCGGGCAGCACTCCTCGCTCTCCGGCACCCCCACCTTGAGCTTCAGCAGGTCTTGTGGCAGTAG
TTGAGAAGGAGAGAGAGATCGACGGGGATGTTGAGATTGATGCCGAGGATGTTGGCCTTGATGGCGGTGCAGAGGCAGACGGCGGCGTCGAGGTCGACGA
GGCCACCCAGCAACGGGCAGCACTGCTCGCTCTCCGGCACGCCGATCTTCAGCTTCAGCAGGTTGAGCACGTTGGCGCACACGCCCAGCTTCAGCGCGTC
GATCGGGCACTTATTCCCTCCACCGCCACCACCCGACGGCGGCGGCATCACCGGCGGGGTCGGTGTGGGGCAGTAGGGCTCGCATGCCTGCACTACTGCA
CCCATCTGCATGGTGATGAGCACATTGAGGGCAAGGAACAGCGCACAGACCTGCACCTTCTTCTTGCCGCCCATCGTCTTAATTAATTAAGTAGCTACTA
CTGCTTAGCAATCAGCAGCTTCTGCCTATATATAGCTCAGCTCGTTCGATCGATCAGAAGAAGAAGCTGGAGCTGGAGATGGAGCTGCCTTTTGATATTA
ATTTGCTAGCTAGCTCGATCGGCCGGGATGC