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Detailed information on CNT30596886


BLAST search results

BLAST vs Swiss-Prot:
sp|P12330|CB21_ORYSJ, E-value = 6e-130

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30186317Oryza meridionalisSecale cereale56.3957.4692.16574forward
CNT30299182Oryza meridionalisTriticum aestivum57.8655.4193.72589forward
CNT30224983Oryza meridionalisHordeum vulgare23.4839.1895.4239forward
CNT30394515Oryza meridionalisTriticum turgidum26.8233.2195.24273forward
CNT30440100Oryza meridionalisAegilops tauschii57.8657.7593.55589forward
CNT30250793Oryza meridionalisAvena sativa56.5856.4790.1576forward
CNT30665254Oryza meridionalisTriticum dicoccoides57.8659.0893.89589forward
CNT30129910Oryza meridionalisCorymbia citriodora27.544.4493.57280forward
CNT30685359Oryza meridionalisTriticum urartu50.295191.99512forward
CNT30345523Oryza meridionalisEragrostis tef26.8230.395.24273forward
CNT30362364Oryza meridionalisSorghum bicolor51.6751.6792.02526forward
CNT30603531Oryza meridionalisOryza punctata57.8654.0495.08589forward
CNT3063160Oryza meridionalisSelaginella moellendorffii49.3164.2885.66502forward

Expression of CNT30596886

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MIKSANQNNGQISTKTISWETNKIIIAKTSSSSSSSS*

>peptide 2 (31 aa)
YVFRLYYIIRMVIFWDRWSICFQPNRDDQIR*

>peptide 3 (67 aa)
MRPPSLKICEPALNHTASPNLTPFRARSSGKTQPSAPSIAHREWITSSSRFLANVSGSAESPAVSQP*

>peptide 4 (43 aa)
MAWTKKPNMENMARRPFLISFTLSSANASGSSARPSGSKAPPG*

Sequence

>CNT30596886
TATGTATTTAGACTATACTACATAATCAGAATGGTTATATTTTGGGATCGATGGAGTATTTGTTTCCAACCTAATAGAGATGATCAAATCCGCTAATCAG
AATAACGGACAGATAAGTACCAAGACCATCAGTTGGGAAACGAATAAAATCATTATTGCAAAAACATCATCTTCATCTTCTTCTTCTTCTTAGTGTACAC
AACACCAACTCGATCATCATCTCGTCGCACCAAACCCATCTTCCCCAACCCAAAGACAACGAACTCGCTGGCCACAAATCCATTTCAACTACGCTCCCCT
CTCACTTGCCGGGGACGAAGTTGGTGGCGTACGCCCAGGCGTTGTTGTTGACGGGGTCGGCGAGGTGGTCGGCGAGGTTCTCGAGCGGGCCCTTGCCGGT
GACGATGGCCTGGACGAAGAAGCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGATCTCCTTCACCTTGAGCTCCGCGAACGCCTCGGGGTCGTCG
GCGAGGCCGAGCGGGTCGAAGGCGCCGCCGGGGTAGAGCGGGTCGACGACCTCGCCGAGCGGGCCGCCGGCGATGCGCCCCCCCTCGCTGAAGATCTGCG
AGCCCGCCTTGAACCACACGGCCTCGCCGAACTTGACGCCGTTCCGGGCGAGGAGCTCCGGGAAGACGCAGCCGAGCGCGCCCAGCATCGCCCACCGGGA
GTGGATCACCTCCAGCTCCCGGTTCTTGGCGAACGTCTCCGGGTCGGCGGAGAGCCCCGCGGTGTCCCAGCCGTAGTCGCCCGGGAACTCGCCGGTGAGG
TAGCTCGGCGGCTCGCCGGAGAGCGGGCCGAGGTAGAGGACGCGGTCGGCGCCGTACCACGGGCTCCCCGACGCCGCCGGCTTGGGCTTCGCGGCGGAGG
TCGACGGCGCCGCGCGGGCCATCACCGGGGAGGAGAGCGCCATGGTGGCCGCGGCCATTGATGCACTGAGCTGTGAGAGCTGAGAGAGATGGCGATGAGC
GAGAGTGAGTTGGGAGTT