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Detailed information on CNT30596860


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695846Oryza meridionalisOryza sativa50.5784.7699.33445forward
CNT30554851Oryza meridionalisOryza glaberrima99.5579.5699.32876forward
CNT30344350Oryza meridionalisEragrostis tef36.5941.7184.47322forward
CNT30371067Oryza meridionalisOryza glumipatula76.9385.799.56677forward
CNT30103490Oryza meridionalisOryza rufipogon95.5798.8299.52841forward
CNT30577705Oryza meridionalisOryza barthii92.8472.4999.27817forward
CNT30117503Oryza meridionalisOryza nivara54.6610098.96481forward
CNT30604579Oryza meridionalisOryza punctata59.32101.9591.19522forward

Expression of CNT30596860

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MFISNVSVEARGLTGGMRSTGSAGFAGTFASIANKSLSELFS*

Sequence

>CNT30596860
GTAGATACGCAATATGAGCACAACTATATAACTTAATAAGCACATTACAGCACACACATGGCCAAGGCAGTTATTTGAATCAGTCTCCAACATACTTCAA
ATCATAGACCACACCATACAGCAAACATAGTATAAACATTGTCATAGAGAGTACAGCTGATAGCAGCATGTGATATTCTAGCATTACTTTGGTAGCATCC
CTCTACAAAACATAGCAGACATCACCAGCTCTTCATCTTGGCCATACACATTCAACCTGACAAGAAAACCATATCCCATTTTACAACATATGTAATCTGT
ACATGAAAATGTATCTACAAGAAATCAAAATAGTAGGTAGTGTGGAGTGCCTTACATGGTTTGCTAGTGACAGACCACACTGACCAGAACCTTTCGTCTC
CTCAGTAGCATCATTTTGCAGAAGGTTGTCCATTGATTCATCTGAGCTGCTCTCAACATAAGGTAATGGCAAATACTTCATCTCGGGATCGAAGGTGGGC
ATGTTTTGTGCGAGATTAGGCATGCCATTTCCCTGGGGCACGGCGATACCATAGTTGTTCCTCATTCTCTTTGGTGCTCCACCTGTCAGGTAAGCAGGTT
CACCATATGCTGGCATGGCAGCATTAGGAACGAAGACTGAAGTGTAGTCTGGGGTCAGGGTGTCATCCTCCCAACCAAAGTCTGAAGAGCCAAATGAGTT
GCTGCTCGTATCAGAGAGCATGTTCATCTCGAATGTCTCAGTGGAAGCAAGAGGTTTGACTGGAGGCATGAGATCAACAGGCTCTGCCGGCTTTGCAGGC
ACCTTTGCAAGCATTGCAAACAAATCATTGTCTGAACTGTTTAGCTGAAAGAAAGCATCATCGCCACAGGTCTTCAGAGG