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Detailed information on CNT30596782


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691479Oryza meridionalisOryza sativa30.8119.6191.67240forward
CNT30100547Oryza meridionalisOryza rufipogon30.8116.7892.08240forward
CNT30115942Oryza meridionalisOryza nivara30.4216.3691.98237forward

Expression of CNT30596782

Peptides detected in this lncRNA

>peptide 1 (31 aa)
KHNPPNPPSSSSLFFLVLPFSPSRSPSAAAS*

>peptide 2 (31 aa)
MENLVKYNMFDTFALESLKYGKIVNYYEFRD*

>peptide 3 (42 aa)
QNTTHLTHLLPLLSFSSFSPSLPHALPVPPLPRQRRRRRRSP*

Sequence

>CNT30596782
CAAAACACAACCCACCTAACCCACCTTCTTCCTCTTCTCTCTTTTTCCTCGTTCTCCCCTTCTCTCCCTCACGCTCTCCCAGTGCCGCCGCTTCCTAGGC
AGCGCCGGCGACGCCGCCGCTCTCCCTAGCGCCGGCTGCAGCGCCCTACTCCGGCGACCCCTCAAGCAGATGTCCCGCAGCCGCGAATCGGTTTCTTGGC
TCCTCATGAGTCTGCCCCTAAGCTAACCCTAGCCATCGGTCTCCTGCTGCTGCAGCCGCCGTGGAGATGGCCGGTGGAAACACAGGCAACTCCGGTGGCT
GAATCCCTCTCCTCCATAGAAACTGAAGTATTTGGACACTTCTTCTTCTTGAGCTGGACTGCTGGAACACCACTTGCTCCTTCTTCAGAATCCCCAGCCG
AACTCCTGTTGATGACTGCTGTTGCGGCAGCTGCTGCTATTGCTCTTTGCAGTAGAAATTGGTAGTACCACTGCTGTGGCTACTGCTGATCTCGGTCTCT
ACGATAGTTCACACTGAGATGGTTAATTTGGTGGAGCTGAACTAGTGACTCACCTACTGGTTGTTTGGTGGCTTCATGCATGCTAGACACCTAACCATAG
CATATGCTCGGTGGAATGATGGATAGATTTTTACTAATTTTTAGTTTAGATGGAAAATCTGGTAAAGTATAATATGTTTGATACTTTTGCACTTGAATCC
CTCAAGTATGGTAAAATTGTAAATTACTACGAATTTAGGGATTGACATGCAATTGCCCTATAACTCAAGAGTTTTTCTG