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Detailed information on CNT3059678


BLAST search results

BLAST vs Swiss-Prot:
sp|Q76H85|H4_SILLA, E-value = 4e-39

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671259Arabidopsis lyrataSetaria viridis33.4739.3683.23161forward
CNT30523218Arabidopsis lyrataSetaria italica33.4729.4983.23161forward
CNT30317753Arabidopsis lyrataCorylus avellana33.6823.2882.72162forward
CNT30549659Arabidopsis lyrataIpomoea triloba24.7439.1484.03119forward
CNT30703567Arabidopsis lyrataQuercus lobata31.1929.784150forward
CNT30375418Arabidopsis lyrataArabidopsis thaliana20.3741.5385.7198forward
CNT30617135Arabidopsis lyrataSesamum indicum35.3416.9585.88170forward
CNT3069058Arabidopsis lyrataQuercus suber35.5519.5482.46171forward
CNT30198310Arabidopsis lyrataPisum sativum25.9915.8484.8125forward
CNT30712284Arabidopsis lyrataGlycine max34.134.8981.71164forward
CNT3042757Arabidopsis lyrataPrunus dulcis27.2321.6289.31131forward
CNT30186872Arabidopsis lyrataSecale cereale32.8531.6684.18158forward
CNT30283432Arabidopsis lyrataTriticum aestivum33.4730.6183.85161forward
CNT30221015Arabidopsis lyrataHordeum vulgare25.3623.1586.89122forward
CNT30397255Arabidopsis lyrataTriticum turgidum33.4733.283.85161forward
CNT30565712Arabidopsis lyrataActinidia chinensis14.1422.7485.2968forward
CNT3086297Arabidopsis lyrataVigna radiata36.5915.1383.52176forward
CNT30172567Arabidopsis lyrataTrifolium pratense35.7625.2284.88172forward
CNT30439225Arabidopsis lyrataAegilops tauschii33.4755.5283.85161forward
CNT30252143Arabidopsis lyrataAvena sativa34.115.8683.54164forward
CNT30664208Arabidopsis lyrataTriticum dicoccoides32.8531.4184.18158forward
CNT3082467Arabidopsis lyrataBrassica juncea37.6325.2487.29181forward
CNT30261175Arabidopsis lyrataBrassica rapa27.8628.3986.57134forward
CNT30611328Arabidopsis lyrataArabis alpina37.8439.9191.21182forward
CNT30444399Arabidopsis lyrataSaccharum spontaneum27.8622.4885.07134forward
CNT30139599Arabidopsis lyrataLolium perenne33.4733.6883.85161forward
CNT30211420Arabidopsis lyrataHelianthus annuus25.782585.48124forward
CNT30679384Arabidopsis lyrataTriticum urartu33.4726.5783.85161forward
CNT30348363Arabidopsis lyrataEragrostis tef33.4728.983.23161forward
CNT30619612Arabidopsis lyrataCajanus cajan25.9929.8384125forward
CNT30357929Arabidopsis lyrataLactuca sativa37.6340.481.22181forward
CNT30370989Arabidopsis lyrataOryza glumipatula24.7419.0484.87119forward
CNT30414711Arabidopsis lyrataPapaver somniferum33.4716.8483.23161forward
CNT30645368Arabidopsis lyrataCannabis sativa37.0153.7884.83178forward
CNT3024855Arabidopsis lyrataPopulus trichocarpa26.8221.9882.95129forward
CNT30325970Arabidopsis lyrataAsparagus officinalis33.4723.3381.37161forward
CNT30331117Arabidopsis lyrataDioscorea rotundata37.2118.979.33179forward
CNT30147953Arabidopsis lyrataBrachypodium distachyon33.4718.5383.23161forward
CNT30101647Arabidopsis lyrataOryza rufipogon24.7412.7784.87119forward
CNT30496126Arabidopsis lyrataDigitaria exilis33.4723.6885.71161forward
CNT3050826Arabidopsis lyrataCucumis sativus27.2338.4283.97131forward

Expression of CNT3059678

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MLSLRTFLCLFAPPFPNPFPPFPLPDISSQ*

Sequence

>CNT3059678
AACAAATGGATCATTCGCATAAGATTTTCTTAGCAGAAAGTTTGCAAAGATTTTGAACTAGTACATCACATTGGCTAACAACAACAAGAACAAGAAAAAA
AACGAACTAACTCCTGGATTTACTTTTTGACTAATCAAACCTAAAACACACATCTCAGAAACAAGAAATTCCCAAACTTGCTAATCTCCAGATTAACCGC
CGAAACCGTAGAGAGTGCGTCCTTGCCTCTTCAAAGCGTAGACAACATCCATGGCAGTCACCGTCTTCCTCCTGGCGTGCTCAGTGTAGGTAACGGCGTC
ACGGATGACATTCTCGAGGAAGATCTTGAGGACACCTCTGGTCTCTTCGTAGATGAGACCACTGATACGCTTGGTGATACCTTGAATGTTATCTCTCAGA
ACCTTCCTGTGCCTCTTCGCTCCTCCCTTTCCCAATCCTTTTCCTCCCTTTCCTCTTCCTGACATCTCTTCACAGTGATCT