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Detailed information on CNT30596761


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6ZBP3|H2B2_ORYSJ, E-value = 2e-38

BLAST vs NONCODE:
NONORUT000045, E-value = 1e-32

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693619Oryza meridionalisOryza sativa42.6653.2490.5337forward
CNT30671720Oryza meridionalisSetaria viridis24.9443.8894.92197forward
CNT30522940Oryza meridionalisSetaria italica33.2937.3693.54263forward
CNT30315505Oryza meridionalisCorylus avellana23.0439.8286.26182forward
CNT30518005Oryza meridionalisJuglans regia32.9152.183.08260forward
CNT30702570Oryza meridionalisQuercus lobata16.8426.687.97133forward
CNT30526697Oryza meridionalisPhaseolus vulgaris16.248.6784.38128forward
CNT30630598Oryza meridionalisVigna unguiculata15.8222.4483.2125forward
CNT30196132Oryza meridionalisPisum sativum14.6824.4785.34116forward
CNT30163372Oryza meridionalisPistacia vera14.6820.1481.03116forward
CNT30179138Oryza meridionalisSecale cereale27.5927.0194.04218forward
CNT30296237Oryza meridionalisTriticum aestivum33.2954.5693.92263forward
CNT30220727Oryza meridionalisHordeum vulgare27.0927.4492.06214forward
CNT30395424Oryza meridionalisTriticum turgidum27.0944.4993.46214forward
CNT30565715Oryza meridionalisActinidia chinensis25.1925.3587.44199forward
CNT30586986Oryza meridionalisMusa acuminata23.9253.3986.24189forward
CNT30554669Oryza meridionalisOryza glaberrima33.0445.9598.85261forward
CNT30172842Oryza meridionalisTrifolium pratense16.5823.6581.68131forward
CNT30434919Oryza meridionalisAegilops tauschii32.7842.6790.73259forward
CNT30246240Oryza meridionalisAvena sativa36.5860.0889.62289forward
CNT30657146Oryza meridionalisTriticum dicoccoides32.7845.6893.05259forward
CNT30597299Oryza meridionalisFraxinus excelsior25.0636.0780.3198forward
CNT30447591Oryza meridionalisSaccharum spontaneum27.594093.12218forward
CNT30130711Oryza meridionalisLolium perenne26.0830.2994.66206forward
CNT303693Oryza meridionalisZea mays17.8540.8793.62141forward
CNT30606042Oryza meridionalisGossypium raimondii17.4745.2586.23138forward
CNT30205622Oryza meridionalisHelianthus annuus9.6228.1588.1676forward
CNT30129800Oryza meridionalisCorymbia citriodora25.0624.686.87198forward
CNT30684130Oryza meridionalisTriticum urartu27.7230.2194.06219forward
CNT30722585Oryza meridionalisTriticum spelta28.2330.4293.72223forward
CNT30346527Oryza meridionalisEragrostis tef22.4183.8992.66177forward
CNT30363575Oryza meridionalisSorghum bicolor28.2324.1993.72223forward
CNT30360078Oryza meridionalisLactuca sativa20.1320.0882.39159forward
CNT30369169Oryza meridionalisOryza glumipatula27.7238.2291.78219forward
CNT3052765Oryza meridionalisAmborella trichopoda16.5825.7985.5131forward
CNT30327286Oryza meridionalisAsparagus officinalis26.0822.7985.44206forward
CNT30149313Oryza meridionalisBrachypodium distachyon15.5735.2492.68123forward
CNT30103076Oryza meridionalisOryza rufipogon33.0443.2898.85261forward
CNT30577496Oryza meridionalisOryza barthii67.0999.2596.6530forward
CNT30496069Oryza meridionalisDigitaria exilis26.4626.1993.3209forward
CNT30557628Oryza meridionalisPanicum hallii24.334.4793.23192forward
CNT3065708Oryza meridionalisSelaginella moellendorffii16.3337.1883.72129forward
CNT30114697Oryza meridionalisEutrema salsugineum16.7121.5382.58132forward

Expression of CNT30596761

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MVGFLLYLASLAASPASFSKMSLMNEFMIDMALDEIPMSGCTCLSTLKMYIL*

Sequence

>CNT30596761
AATTAAACAGCATCCACAATTCCACACAAAAATGACGCAAATTAGAATGCAGTAACAATTTAGCAACCAGAGGTTGCAACCATCACCATTAATTTAAGAT
CAGAACTCCACGGGCACAACCACAAGATTCTTACAGTAATCAGCAAGCACTAGACAGGAACACTAGACACAAGAGAAAGAAATCAGAGATCGACAGGGCA
ACTACCGCCGCTGCCATGGACTCGCTACGACGAAGACGAAGAGAAATCACCAGCACCCCACTACACTAGAGCGCCTAAGAGCTGGTGAACTTGGTGACGG
CCTTGGTGCCCTCGGAGACGGCGTGCTTGGCGGACGGAGGTCTGGATCTCCCTGGAGGTGATGGTGGGCTTCTTGTTGTACCTGGCGAGCTTGGCGGCCT
CGCCGGCGAGCTTCTCGAAGATGTCGTTGATGAACGAGTTCATGATCGACATGGCCTTGGATGAGATCCCGATGTCCGGGTGCACCTGCTTGAGCACCTT
GAAGATGTATATCTTGTAGGTCTCGACGCTCTTCTTCGCCTTCTTCCTGCCGCGCTCCTTCTTGCCCTCGCCGCCCTTCTCCCCCTTGGACGCCGGCAGC
CGCTTCTCGGCCTTGGGCTTCTTCCCGGCCGCGGGCGCCTTCTCCGCCTTCTCGCCGGCCTTCTCCTCCGCCGGCTTCTTCTCCGCGGGCTTCTTCTCGG
CCTTGGGCGCCATCGAGATCGGTGGTGATGGTGGTGATGTTCGACGAAATGTGCGAAAGGAGGCGAGGTGAGTGCGTGTTTTGATTTGGG