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Detailed information on CNT30596758


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000270, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697308Oryza meridionalisOryza sativa91.9847.9191.28883forward
CNT30552239Oryza meridionalisOryza glaberrima91.6753.1492.16880forward
CNT30106741Oryza meridionalisOryza longistaminata67.461.594.74647forward
CNT3099966Oryza meridionalisOryza rufipogon91.4662.1891.8878forward
CNT30574647Oryza meridionalisOryza barthii91.6745.7191.82880forward
CNT30118029Oryza meridionalisOryza nivara91.4675.4392.14878forward
CNT30593965Oryza meridionalisEragrostis curvula5.9420.2892.9857reverse complement

Expression of CNT30596758

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MFHSSGSFCLYYSSTMRSHGNAIWTLFMILEKR*

>peptide 2 (34 aa)
VWRVPTLEELSRSIEGVKASTRRTCVMDKLCYFV*

>peptide 3 (40 aa)
MSVFLGETLPKFLIILGLSGFECILVWHSRCVLTWGVRAP*

>peptide 4 (61 aa)
MCIFYWFNIVLAEYSLLTLVFNLVFRYLMILIGMGREYHPWTTHYYCTLLKFSFRLRFCLA*

Sequence

>CNT30596758
GGTGTGGAGGGTTCCAACGTTGGAGGAGTTAAGTCGGAGTATCGAAGGAGTTAAGGCAAGTACACGACGGACTTGTGTGATGGATAAACTGTGTTACTTT
GTTTGATTTTATTTACCCAATTATTATTCGAAGCTTCCTATTATCAATTGTGTGGTTTTGGTATTATGCTACATATTCATATTTCACTTTAAGTTCAAGT
TCACGACGTTATTCATGTTTCATTCTTCCGGAAGTTTTTGTTTATATTATTCAAGTACCATGCGTAGTCATGGGAATGCAATTTGGACTTTATTCATGAT
CCTTGAGAAGCGCTGATCACGCTTGCTCGGTTTACCGGTAATGCTAAGAGGATATTCACACCTACCTGGGAGGGAACTACTACTTTTTGCCTCCTTCGTA
TTAAATTAAAGGAAATCAAATGTTTCATATTGGTTTCTTCTTGCATTAAACATGTGTATATTTTACTGGTTCAATATTGTACTTGCTGAGTATTCTTTAC
TCACTCTTGTGTTCAATTTGGTTTTTAGGTACCTAATGATATTGATCGGCATGGGACGGGAGTATCACCCTTGGACTACACATTATTATTGCACATTATT
GAAATTTAGTTTTAGACTACGTTTCTGCTTAGCATAAGTTTTGTGTAGAACTTGTAAAGGTCATTTAAAGTTCCGGTCCATAGTTTTCACGGGGAATTCA
TGGGGCTAGGATGGTTTGGATTGTGGGTTATATCCTTATTGAGTATCTTATAACTGCCTGTCGTGGATGTCCGTATTTCTAGGGGAGACTCTGCCGAAAT
TTCTAATAATTTTGGGACTAAGTGGTTTTGAGTGTATTTTGGTGTGGCACTCTAGGTGCGTGCTTACCTGGGGTGTTAGAGCGCCCTAATGATCACGGTC
TAGCGCTGTGGCAGTTCAGATTCCTGGTCACCAACCGAATGGGCCAGGCCCAACATGAGC