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Detailed information on CNT30596757


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675629Oryza meridionalisSetaria viridis37.9323.9196.5988forward
CNT30377298Oryza meridionalisArabidopsis thaliana31.929.7287.8474forward
CNT30282455Oryza meridionalisChenopodium quinoa34.485.7283.7580forward
CNT30566785Oryza meridionalisActinidia chinensis37.0732.3386.0586forward
CNT30311909Oryza meridionalisCamelina sativa35.7817.5591.5783forward
CNT30468549Oryza meridionalisSaccharum spontaneum43.9744.3597.06102forward
CNT302051Oryza meridionalisZea mays31.0331.7297.2272forward
CNT30351629Oryza meridionalisEragrostis tef45.2632.0193.33105forward
CNT30366950Oryza meridionalisSorghum bicolor42.6711.5797.9899forward
CNT30371008Oryza meridionalisOryza glumipatula40.9538.4694.7495reverse complement
CNT30107294Oryza meridionalisOryza longistaminata45.2638.695.24105forward
CNT30103405Oryza meridionalisOryza rufipogon34.9138.5793.8381reverse complement
CNT30175658Oryza meridionalisVigna angularis39.6637.2585.8792forward
CNT30558210Oryza meridionalisPanicum hallii43.9749.5195.1102forward

Expression of CNT30596757

Peptides detected in this lncRNA

>peptide 1 (76 aa)
AEEDLLVGVERVDDERQQLVDLRLEGERLRLRGHGSGGGRKLPEDDDLEARVRALGEGARVACAIRLEKDGEEGGRY

>peptide 2 (42 aa)
MMSDSSWLISAWKANVSVSEAMAAAAAGSFQRTTTWRLGLGL*

Sequence

>CNT30596757
GCGGAGGAAGATCTCCTTGTTGGAGTAGAACGTGTTGATGATGAGCGACAGCAGCTGGTTGATCTCCGCCTGGAAGGCGAACGTCTCCGTCTCCGAGGCC
ATGGCAGCGGCGGCGGCCGGAAGCTTCCAGAGGACGACGACTTGGAGGCTAGGGTTAGGGCTTTAGGAGAGGGAGCTCGCGTGGCGTGTGCGATTCGATT
GGAGAAGGATGGGGAAGAAGGGGGGCGATATA