« Back to Oryza meridionalis search


Detailed information on CNT30596746


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT001400, E-value = 4e-123

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30578505Oryza meridionalisOryza barthii26.2521.8192.94340forward

Expression of CNT30596746

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MISMSTMYMHNIWDAYCIRFLVYNYMHVCMQTYSGKL*

>peptide 2 (42 aa)
QNTTHLTHLLPLLSFSSFSPSLPHALPVPPLPRQRRRRRRSP*

>peptide 3 (31 aa)
MENLVKYNMFDTFALESLKYGKIVNYYEFRD*

>peptide 4 (31 aa)
KHNPPNPPSSSSLFFLVLPFSPSRSPSAAAS*

Sequence

>CNT30596746
CAAAACACAACCCACCTAACCCACCTTCTTCCTCTTCTCTCTTTTTCCTCGTTCTCCCCTTCTCTCCCTCACGCTCTCCCAGTGCCGCCGCTTCCTAGGC
AGCGCCGGCGACGCCGCCGCTCTCCCTAGCGCCGGCTGCAGCGCCCTACTCCGGCGACCCCTCAAGCAGATGTCCCGCAGCCGCGAATCGGTTTCTTGGC
TCCTCATGAGTCTGCCCCTAAGCTAACCCTAGCCATCGGTCTCCTGCTGCTGCAGCCGCCGTGGAGATGGCCGGTGGAAACACAGGCAACTCCGGTGGCT
GAATCCCTCTCCTCCATAGAAACTGAAGTATTTGGACACTTCTTCTTCTTGAGCTGGACTGCTGGAACACCACTTGCTCCTTCTTCAGGTTGGTCTCTCT
GCTGTCTCATTTCAGCATCTTCTTGCTACTTTGGTTTATATGGTAAAATATGTGAAAATATTAATTGGCATCTGGATCTGCTACTTCCCTTGCTCTTCCT
GGAATTGATCCTCTTGCTTGATTGCTGCTCCATCTTGCTTGAGCTGCTACTGGTTACAACTCCTCTGACCTCTCATTCACTCACCCTAGCCTCCCCTGGC
TGCACACACAAGTTTGCTACGGCTGTGGTGATGCATGGGTGAGATGTTGAACTACTGATCTGCTTGCTGTGATTATTGCTCTTTGGCTTGAGCAGAATCC
CCAGCCGAACTCCTGTTGATGACTGCTGTTGCGGCAGCTGCTGCTATTGCTCTTTGCAGTAGAAATTGGTAGTACCACTGCTGTGGCTACTGCTGATCTC
GGTCTCTACGATAGTTCACACTGAGATGGTTAATTTGGTGGAGCTGAACTAGTGACTCACCTACTGGTTGTTTGGTGGCTTCATGCATGCTAGACACCTA
ACCATAGCATATGCTCGGTGGAATGATGGATAGATTTTTACTAATTTTTAGTTTAGATGGAAAATCTGGTAAAGTATAATATGTTTGATACTTTTGCACT
TGAATCCCTCAAGTATGGTAAAATTGTAAATTACTACGAATTTAGGGATTGACATGCAATTGCCCTATAACTCAAGAGTTTTTCTGAAAATAAATAATTA
TTGAATCTTTGACTGAGATGGTTCAGTTTATGATATGATATCTATGAGCACCATGTATATGCACAATATATGGGATGCATACTGTATAAGATTTCTAGTG
TACAATTATATGCATGTATGTATGCAGACCTATAGTGGTAAATTGTAAATAAAGAATTGTGATTTCTACCGTGCACATGTGTACCTCACTTCGTG