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Detailed information on CNT30596739


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30523536Oryza meridionalisSetaria italica52.9260.8882.56344forward
CNT30316024Oryza meridionalisCorylus avellana45.0836.481.23293forward
CNT30549216Oryza meridionalisIpomoea triloba45.5452.0282.09296forward
CNT30516897Oryza meridionalisJuglans regia41.3830.4381.78269forward
CNT30377104Oryza meridionalisArabidopsis thaliana41.0837.8282.02267forward
CNT30616442Oryza meridionalisSesamum indicum42.3126.4481.45275forward
CNT30403468Oryza meridionalisBeta vulgaris27.5423.1383.24179forward
CNT30710467Oryza meridionalisGlycine max36.7733.0683.26239forward
CNT3091361Oryza meridionalisSolanum tuberosum42.3137.4181.45275forward
CNT30559586Oryza meridionalisActinidia chinensis41.2333.2180.22268forward
CNT30508722Oryza meridionalisSolanum lycopersicum42.3153.6182.91275forward
CNT3079663Oryza meridionalisBrassica juncea39.0847.7481.1254forward
CNT30263459Oryza meridionalisBrassica rapa41.8550.2882.35272forward
CNT30468674Oryza meridionalisSaccharum spontaneum52.3137.0885340forward
CNT30341749Oryza meridionalisEragrostis tef53.8578.6588.57350forward
CNT30476941Oryza meridionalisArabidopsis halleri40.9233.2182.33266forward
CNT30366979Oryza meridionalisSorghum bicolor47.3850.4184.09308forward
CNT30354661Oryza meridionalisLactuca sativa4653.7881.27299forward
CNT30109704Oryza meridionalisOryza longistaminata62.1572.6687.87404forward
CNT30577473Oryza meridionalisOryza barthii83.8510099.27545forward

Expression of CNT30596739

Peptides detected in this lncRNA

>peptide 1 (63 aa)
MMEKWDCSWVKQDYMMEKLGCILALDCIPEKMDCNHPLTMECSLVKVLVRKPFLQHMARTEHL*

>peptide 2 (53 aa)
MQEMSDCMRVMSDCMRGKWGCKTETLDCMMEMLGYMMVMWGCKMVMWGCKMVM*

>peptide 3 (54 aa)
LVKSDCKGSALGCLESTRGKDCTWPKKDCSLVKLDCNLVKLGCSLEMSGCNQVM*

Sequence

>CNT30596739
ATTTGGTGAAGTCTGACTGTAAGGGCTCAGCCTTGGGCTGCTTGGAGAGTACGCGTGGGAAGGACTGTACTTGGCCGAAGAAGGATTGTAGCTTGGTGAA
GTTGGACTGTAATTTGGTGAAGTTGGGCTGTAGCTTGGAGATGTCGGGCTGTAACCAGGTGATGTAGGGCTGTATGCAGGAGATGTCGGACTGTATGAGG
GTGATGTCGGACTGTATGAGGGGGAAGTGGGGCTGTAAGACGGAGACGTTGGACTGTATGATGGAGATGTTGGGCTATATGATGGTGATGTGGGGCTGTA
AGATGGTGATGTGGGGCTGTAAGATGGTGATGTAGGGCTGTAGCTTGGAGATGTTGGTGAGTATGATGGACTGGTAGGCGAGTATGACGGACTGGTAGGT
GAGTATGATGGACTTGTTGGCGAGTAAGTAGGAGAGCCAGGTGTATATGATGGAGAAGTGGGACTGTAGCTGGGTGAAGCAGGACTATATGATGGAGAAG
TTGGGCTGTATCCTGGCCCTGGACTGTATACCGGAGAAGATGGACTGTAACCACCCCCTGACGATGGAGTGTAGCCTGGTGAAGGTACTGGTGAGAAAGC
CATTCCTCCAACATATGGCGAGAACTGAGCATCTGTAATGGGGGAAGCCC