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Detailed information on CNT30596728


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672556Oryza meridionalisSetaria viridis46.1967.8891.07224forward
CNT30393881Oryza meridionalisTriticum turgidum40.6248.8889.34197forward
CNT30587002Oryza meridionalisMusa acuminata17.7331.8594.1986forward
CNT30511330Oryza meridionalisSolanum lycopersicum22.0626.2385.98107forward
CNT30555589Oryza meridionalisOryza glaberrima75.4620.9798.36366forward
CNT30440426Oryza meridionalisAegilops tauschii24.3325.1695.76118forward
CNT30624277Oryza meridionalisDaucus carota23.323.7482.3113forward
CNT30721746Oryza meridionalisTriticum spelta24.957.5295.87121forward
CNT30371441Oryza meridionalisOryza glumipatula84.54100.4998.78410forward
CNT3054135Oryza meridionalisAmborella trichopoda24.1219.2882.91117forward
CNT3024196Oryza meridionalisPopulus trichocarpa20.6222.0384100forward
CNT30322486Oryza meridionalisAsparagus officinalis22.4723.2486.24109forward
CNT30151232Oryza meridionalisBrachypodium distachyon50.120.0592.59243forward
CNT30104395Oryza meridionalisOryza rufipogon63.362.1598.7307forward
CNT30578506Oryza meridionalisOryza barthii95.0528.9999.13461forward
CNT30117442Oryza meridionalisOryza nivara84.33100.4999.02409forward

Expression of CNT30596728

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MRPTFWPGGASRRTVEAFPALSIGFSVLPPPAT*

>peptide 2 (30 aa)
MTTKTANIHHKCDQSTKQKARPYWNTCPLI*

Sequence

>CNT30596728
GGAACACTACTGATAATTACCGTGAGCTAATTCAACAACTCAAGGATTAAATAACCAGGTAAAAACTTCTTTAGGTGGAATGTAGAATCCAGACCATATG
ACCACGAAAACTGCGAACATTCATCACAAATGTGACCAGAGTACCAAGCAAAAAGCACGACCATACTGGAATACATGTCCTTTAATCTAGCGATGATAAG
CATGGTAGCGAATATGGATAGTAGCAACAATAAGTAACACTCTAAGTGGCCTTGTCGGCCTTGGCAGCGGTAGCGGCGGCCTGGCCTCTGAGACGACCAG
TCCTCCTTGCAGCGATGAGACCGACCTTCTGGCCAGGAGGTGCATCACGGCGGACGGTGGAGGCGTTTCCAGCCTTGAGCATCGGCTTCTCAGTCCTGCC
ACCGCCAGCAACCTGACCGATCATGGCACGGCAGCTGCTGGGGACAATCTTCTTGGCACCAGAGGGGAGCTTGATCCTGCAAGAA