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Detailed information on CNT30596727


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695524Oryza meridionalisOryza sativa44.7516.5295.77213forward
CNT30675680Oryza meridionalisSetaria viridis16.8127.879580forward
CNT30370946Oryza meridionalisOryza glumipatula44.7517.2295.77213forward
CNT30117373Oryza meridionalisOryza nivara45.1713.7494.88215forward

Expression of CNT30596727

Peptides detected in this lncRNA

>peptide 1 (44 aa)
EHCCYHEIVYPSVVLYISKSPLNSPPHPCIQIHACRKQLPQHTQ*

>peptide 2 (39 aa)
MMVLCHGSDRCCSRNPKNASIASLPATTKIQNNTLASSL*

>peptide 3 (33 aa)
MHPDPCMQETITTTHTVSLNLITSISISSPPIH*

>peptide 4 (53 aa)
MHTPQKKEEEKRREHLPSPNHRFHQPAELSSSSLRCPGHEIHRSHTLSLTASG*

>peptide 5 (66 aa)
MHAGNNYHNTHSKSESHHIHLYLLPPNSLTSYTCILHKKKKKKKEENIFHRPIIGFTSLQNSHQAL*

Sequence

>CNT30596727
TAGAACACTGCTGCTACCATGAGATAGTTTATCCCTCTGTAGTACTGTACATCAGCAAATCACCACTCAACTCACCCCCTCACCCATGCATCCAGATCCA
TGCATGCAGGAAACAATTACCACAACACACACAGTAAGTCTGAATCTCATCACATCCATCTCTATCTCCTCCCCCCCAATTCATTAACATCTTATACATG
CATACTCCACAAAAAAAAGAAGAAGAAAAAAGAAGAGAACATCTTCCATCGCCCAATCATCGGTTTCACCAGCCTGCAGAACTCTCATCAAGCTCTTTGA
GATGCCCTGGCCATGAAATACATCGATCACACACTCTCAGCCTGACAGCGTCTGGATGATGGTGTTGTGCCACGGGTCAGACAGGTGCTGCAGCAGGAAC
CCCAAGAACGCCAGCATCGCCAGCCTCCCTGCAACAACAAAAATTCAGAACAACACATTAGCAAGTAGTCTTTGAT