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Detailed information on CNT30596724


BLAST search results

BLAST vs Swiss-Prot:
sp|Q37069|YCX1_MAIZE, E-value = 2e-07

BLAST vs NONCODE:
NONMEST004927, E-value = 2e-24

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30524663Oryza meridionalisSetaria italica22.4993.4797.43544reverse complement
CNT30641615Oryza meridionalisNymphaea colorata16.8773.6589.71408reverse complement
CNT30632284Oryza meridionalisVigna unguiculata17.0350.3185.19412forward
CNT3047786Oryza meridionalisPrunus dulcis19.0683.9783.51461forward
CNT30157743Oryza meridionalisPistacia vera8.8945.0786.98215forward
CNT30290333Oryza meridionalisTriticum aestivum12.8682.0698.07311reverse complement
CNT30220801Oryza meridionalisHordeum vulgare15.1794.5999.18367reverse complement
CNT30396824Oryza meridionalisTriticum turgidum15.9638.3398.45386forward
CNT30586609Oryza meridionalisMusa acuminata19.6464.8991.16475forward
CNT30538116Oryza meridionalisBrassica napus10.0920.1395.49244reverse complement
CNT30511569Oryza meridionalisSolanum lycopersicum7.2371.1490.29175forward
CNT30660220Oryza meridionalisTriticum dicoccoides10.8777.5898.86263forward
CNT3067405Oryza meridionalisLeersia perrieri6.4537.6898.72156reverse complement
CNT30647597Oryza meridionalisRosa chinensis5.9128.0492.31143reverse complement
CNT30688674Oryza meridionalisTriticum urartu16.6230.5299.25402reverse complement
CNT30720843Oryza meridionalisTriticum spelta8.8910098.6215reverse complement
CNT30347837Oryza meridionalisEragrostis tef22.2469.7897.4538forward
CNT30363261Oryza meridionalisSorghum bicolor31.3859.6297.36759reverse complement
CNT30621619Oryza meridionalisCajanus cajan9.0110087.16218reverse complement
CNT30371139Oryza meridionalisOryza glumipatula4.5522.22100110forward
CNT30331560Oryza meridionalisDioscorea rotundata7.2834.8596.02176reverse complement
CNT30150154Oryza meridionalisBrachypodium distachyon19.5141.2698.31472reverse complement
CNT30104377Oryza meridionalisOryza rufipogon23.2743.7898.76563forward
CNT30576588Oryza meridionalisOryza barthii4.0522.3210098forward
CNT30497700Oryza meridionalisDigitaria exilis15.5868.9298.67377forward
CNT30174498Oryza meridionalisVigna angularis15.8375.8488.25383reverse complement
CNT30551087Oryza meridionalisOryza brachyantha9.6778.52100234forward
CNT30115272Oryza meridionalisEutrema salsugineum5.6628.1989.05137reverse complement

Expression of CNT30596724

Peptides detected in this lncRNA

>peptide 1 (74 aa)
MLLSLHPRMGGEPVAVSAVLPEALGKSEERALILGWAYYLYAFSSYPLRTWLPSVYRRHDNWYTRGASFPVLSY*

>peptide 2 (56 aa)
MLSAVILSALGYPAFTVGTITGTPEVRPSRSSRTRERSSQCSNAHTGYGPNCLTTF*

>peptide 3 (81 aa)
MLIPQIPSLFLLREKKLTTRGPSTSTRHCSVSLRGISNRFQLLFPSQGQVLTRYSPVRHWKHHFPFDLHVLSMPPAFILSQD

>peptide 4 (78 aa)
MDRTVSRRSEPSSRTALMGEQPNPWNHLQLQLGSFHRLSRVEPWDLTADLKSHLQTLYAQSFRITLASSVLPRLLAQS*

>peptide 5 (75 aa)
MLSAVILSALGYPAFTVGTITGTPEVRPSRSSRTRERXYYLYAFSSYPLRTWLPSVYRRHDNWYTRGASFPVLSY*

>peptide 6 (48 aa)
MREILASNCEAPILDWKGHQRPLPSLSIYPRDGRAELFFGFFIFSSKS*

>peptide 7 (50 aa)
MGKPLSLYKNSAFRGVKWERGDVMIEVLNKTTFAFWIWIFFVFQNSEKVK*

>peptide 8 (33 aa)
MREILASNCEAPILDXGWIGVVPLRLGHQNIEP*

>peptide 9 (37 aa)
MKIDGKCLIDLIRSCRNKVQIVRSLGCLSCIHHCTST*

Sequence

>CNT30596724
TTTTTTCTTTCTTTAGAGTTTTCTATATGCACAATTTCTCGATGTTTCGATGAGAATTTCTTGACTTTCCATATATAGAAAGAGATAGACTATAAATGAC
ATCTCTTATGTCAATAAGACCAAAGGGATGGATATTAAATGATAGGAAGTGCTAGGAAGTGAAATAGAATGAAATAGAGCCACTCTGGGCTTACCTATGA
AATGAGGCATGGAACGGAGCCACTACGAAGAAATTCCGGGAGTTACGAAAGAAGCTTCGGACTCATATTGTTCATGGGTTGAGAGCGGGAGTTGAACTCT
AGGAGGTCGAATCCCCCTTGTTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGACTGGTCGTAGGTTCGAATCCTACTTGGGGAGATTTGAT
TCATTCTTTAATGTAAGAATAAAGAATTGAATTAAAGGGCTTGCTTTGACCCTTAGGAGTAGGTAACCCGTTCGCTATCCTTGTTTCTATTGCATTTTAT
CTCATCGTATCACATTCTGTTCTACGATTCCACTTCGACAAAAGGAAAGAGCATACCCAAGTTCAATAGCTTTACGTCCGCTATCCCGATCATGGTTTTC
CTACCCTCAGGGGGAAAGTAAAGGCCCTTCCCCTTTGGAAGGCTGTGGGCGAGGAGGGATTCGAACCCCCGACACCGTGGTTCGTAGCCACGTGCTCTAA
TCCTCTGAGCTACAGGCCCACCCCGTCTCCACTGGATCTCTTCCCGGGGGTACCCCCCAAAAGGAACCTCCCTCTCCTCAGCCATTTCATTTCGGGTTAA
GAAGATGGGAAAGCCCCTTTCTCTCTATAAGAACAGTGCGTTCCGAGGTGTGAAGTGGGAGAGAGGGGATGTGATGATTGAGGTTTTGAATAAGACGACC
TTTGCATTTTGGATTTGGATCTTTTTCGTATTTCAAAATAGTGAAAAAGTCAAATAAGAGGTGTTAAGCTTTTTATCATTCTGGCATCGAGCTATTTTGC
CGCAGGACCTCCCCTACAGTATCGTCACCGCAGTAGAGTTTAACCACCAAATTCGGGATGGATTGGTGTGGTTCCTCTACGCCTAGGACACCAGAATATC
GAACCATGAACGAGGAAAGGCATGAGAGAAATATTGGCTAGTAATTGTGAAGCCCCAATTCTTGACTNGGGATGGATTGGTGTGGTTCCTCTACGCCTAG
GACACCAGAATATCGAACCATGAACGAGGAAAGGCATGAGAGAAATATTGGCTAGTAATTGTGAAGCCCCAATTCTTGACTGGAAGGGACACCAAAGGCC
TCTGCCCTCCCTCTCTATCTATCCAAGAGATGGAAGGGCAGAGCTTTTTTTTGGTTTTTTCATCTTTTCATCAAAGAGTTGAACAATGAAGATAGATGGC
AAGTGCCTGATCGATTTGATCAGGTCGTGTAGGAACAAGGTTCAAATCGTTCGTTCGTTAGGATGCCTCAGCTGCATACATCACTGCACTTCCACTTGAC
ACCTATTTAAACGGCTCGTCTCGCCGCTACCTTATCCTATTTCCATGCTTCTGTCGCTCCATCCCCGTATGGGTGGAGAACCCGTCGCTGTCTCGGCTGT
GCTACCGGAGGCTCTAGGGAAGTCGGAGGAGAGAGCACTCATCTTGGGGTGGGCTTACTACTTATATGCTTTCAGCAGTTATCCTCTCCGCACTTGGCTA
CCCAGCGTTTACCGTAGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACTAGGGAAAGGNCTTACTACTTATATGCTTTCAGC
AGTTATCCTCTCCGCACTTGGCTACCCAGCGTTTACCGTAGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACTAGGGAAAGG
TCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACGACGTTCTGAACCCAGCTCACGTACCGCATTAATGGGCGAACAGCCCAAC
CCTTGGAACCACCTACAGCTCCAGCTTGGTAGTTTCCACCGCCTGTCCAGGGTTGAGCCCTGGGATTTGACGGCGGACTTGAAAAGCCACCTACAGACGC
TTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTCTTACCGCGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCTCAGATACCGTCATTGTT
TCTTCTCCGAGAAAAGAAGTTGACGACCCGTGGGCCTTCCACCTCCACGCGGCATTGCTCCGTCAGCCTACGGGGTATTAGCAACCGTTTCCAGTTGTTG
TTCCCCTCCCAAGGGCAGGTTCTTACGCGTTACTCACCCGTTCGCCACTGGAAACACCACTTCCCGTTCGACTTGCATGTGTTAAGCATGCCGCCAGCGT
TCATCCTGAGCCAGGATCG