Detailed information on CNT30596709


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000948, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30103523Oryza meridionalisOryza rufipogon10088.2797.42504reverse complement
CNT30579234Oryza meridionalisEchinochloa crusgalli29.3714.3381.08148reverse complement
CNT30557434Oryza meridionalisPanicum hallii20.8332.4183.81105forward

Expression of CNT30596709

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MSTCWKDLVVYFQLCVASPSSLTQAAQNDENSSLHQKLGLGPCIITAH*

>peptide 2 (44 aa)
MTKIVLYIRNLGLGLVSLQPIRGPQNLGFAPTSSPGHSSTYINS*

>peptide 3 (40 aa)
MVVVIYLLLRIWERNQTASSTSSADLMKSMLFTREGKRGK*

>peptide 4 (69 aa)
DEDIPSNDTTTPIAQQGPMTRARARELNYQVKSFLANHTSSSQNWVLLNGCCDLLVVKNMGEEPNRKQH*

Sequence

>CNT30596709
TGATGAGGACATCCCTTCCAACGATACAACCACGCCTATTGCACAGCAAGGACCAATGACTAGAGCTCGAGCTCGTGAACTTAATTATCAGGTAAAGTCA
TTCCTAGCTAATCATACAAGTTCTTCCCAGAATTGGGTGCTACTAAATGGTTGTTGTGATCTACTTGTTGTTAAGAATATGGGAGAGGAACCAAACCGCA
AGCAGCACTAGCAGCGCTGATTTGATGAAGTCAATGCTCTTCACTCGGGAGGGCAAACGGGGCAAATGAGTACTTGTTGGAAAGATCTCGTCGTCTACTT
TCAGCTATGTGTGGCCTCACCATCAAGTTTGACCCAGGCTGCTCAGAATGACGAAAATAGTTCTTTACATCAGAAACTTGGGCTTGGGCCTTGTATCATT
ACAGCCCATTAGGGGTCCACAAAACCTAGGGTTTGCTCCCACCTCCTCTCCTGGTCATTCCTCCACCTATATAAACTCCTAGCAGCCACCATTTTGCATT
TTGG