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Detailed information on CNT30596675


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT002243, E-value = 3e-129

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695742Oryza meridionalisOryza sativa44.7555.7983.07443forward
CNT30553528Oryza meridionalisOryza glaberrima15.8654.986.62157reverse complement
CNT30370717Oryza meridionalisOryza glumipatula33.7469.1583.53334reverse complement
CNT30108911Oryza meridionalisOryza longistaminata42.8319.4284.2424reverse complement
CNT30117788Oryza meridionalisOryza nivara27.1766.4284.39269reverse complement
CNT30604461Oryza meridionalisOryza punctata25.0530.0683.47248reverse complement

Expression of CNT30596675

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MWQIERNRWRAAYVADRRAARLGFGRRTRGQRADRGRSGGSGGGRARL*

>peptide 2 (73 aa)
MAPHGPGSQTKLQVHRPITGVASPCFFSCCRLRRSLAMRLDPLERGLRELSIKYSQAENRDQQGGGSGRWRRW*

>peptide 3 (39 aa)
MGGAEPSDACGREAQRERRGEGMRERRDQREDLERWILT*

>peptide 4 (43 aa)
MVIFRTMIAAASDLEESVAGGVCGRSRGIGGGRRMWQIGGRRG*

>peptide 5 (31 aa)
MAKLSSKQNLSNSRYLAIYNGGRTTKGTLGL*

>peptide 6 (34 aa)
MIFREYNERMSETIWVRDAICINVDPTCTSIIYI*

>peptide 7 (30 aa)
MRAGERRRERGGERGCGRGAIRGRILSVGF*

Sequence

>CNT30596675
AAATCGAAGAAACAAGTAAGAACAAGATAAAAGCAATCTGAATTGCAAATAGGAATGATCACACGATAAGTTGGGGTTTCGAATACGAGCAGACGGACGG
TCTATACGACACGCGTGCTGCAAGAAAGTAGCAATGGCTAAACTTTCATCTAAACAAAATCTAAGCAACTCGAGGTATCTAGCTATTTATAATGGTGGGA
GGACGACCAAAGGGACCCTAGGGTTGTGATCCACCTGGTTGGGGCGCATCGCACATGGCCCCACATGGGCCGGGGTCCCAGACGAAGTTACAAGTCCATA
GGCCCATTACAGGTGTCGCATCACCTTGTTTCTTCAGTTGCTGCCGACTGAGAAGGAGTTTGGCAATGAGGCTGGATCCATTGGAAAGAGGACTCCGAGA
GCTTTCCATCAAGTACTCACAGGCCGAAAACAGAGATCAGCAAGGCGGCGGCTCCGGTCGGTGGCGGAGATGGTGATTTTTAGGACGATGATCGCCGCGG
CGTCTGATCTAGAGGAATCGGTGGCGGGCGGCGTATGTGGCAGATCGAGAGGAATCGGTGGCGGGCGGCGTATGTGGCAGATCGGCGGGCGGCGAGGTTA
GGGTTTGGGCGCCGCACGCGAGGGCAGCGAGCGGATCGGGGACGAAGCGGTGGAAGCGGTGGAGGGAGAGCGCGGTTGTAGATAGAAGCGGCGAGGAAGG
AAAAGAAGGCGGAAGGAAAGACGGAGGTGCGATGGGAGGTGCAGAGCCATCGGATGCGTGCGGGAGAGAGGCGCAGAGAGAGAGGAGGGGAGAGGGGATG
CGGGAGAGGCGCGATCAGAGGGAGGATCTTGAGCGTTGGATTTTAACATAGATGATCTTCCGTGAGTATAATGAAAGAATGAGTGAAACCATTTGGGTAA
GAGATGCAATATGTATTAATGTGGATCCTACCTGCACATCTATAATATATATATAATAATATAAATATTTGTATTTTTCCGGTCGTCACA