Detailed information on CNT30596668


BLAST search results

BLAST vs Swiss-Prot:
sp|Q01881|RA05_ORYSJ, E-value = 1e-24

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30102592Oryza meridionalisOryza rufipogon86.8242.8394.16257forward

Expression of CNT30596668

Peptides detected in this lncRNA

>peptide 1 (68 aa)
RRTGASPTPGIAAAGTSGSRFLADIAAGRGCRPPGLGGGTPPWSPSPRARRRRREATQRTLPCWKPYF*

>peptide 2 (55 aa)
MVAVAASTETTARSNTENTTLLEAIFLMQKLLTINLYMRGIAIYGWFVYIAIKTKV

Sequence

>CNT30596668
GCGACGCACTGGCGCTTCACCAACGCCCGGCATCGCGGCAGCGGGTACGTCGGGTAGCCGATTCCTGGCTGACATAGCTGCTGGCCGGGGGTGTAGACCA
CCTGGTCTTGGTGGTGGTACTCCGCCATGGTCGCCGTCGCCGCGAGCACGGAGACGACGGCGAGAAGCAACACAGAGAACACTACCTTGTTGGAAGCCAT
ATTTTTGATGCAGAAACTCTTAACTATCAATTTGTATATGAGAGGAATAGCTATCTATGGTTGGTTTGTATATATAGCTATAAAAACTAAAGTGAT