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Detailed information on CNT30596665


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6Z4N4|40G3_ORYSJ, E-value = 2e-37

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672021Oryza meridionalisSetaria viridis33.6824.0787.58161forward
CNT30553080Oryza meridionalisOryza glaberrima15.0626.1891.6772forward
CNT30252195Oryza meridionalisAvena sativa20.9224.0491100forward
CNT30658727Oryza meridionalisTriticum dicoccoides30.3320.9595.17145forward
CNT30721365Oryza meridionalisTriticum spelta24.4847.5688.03117forward
CNT30556764Oryza meridionalisPanicum hallii30.3318.5491.72145forward

Expression of CNT30596665

Peptides detected in this lncRNA

>peptide 1 (31 aa)
NCMYVIIYVSPSERSSYCQVINLYRYKYTTR*

Sequence

>CNT30596665
CCAACTGTATGTATGTAATTATATATGTGTCGCCCAGCGAGAGGAGCTCTTATTGCCAGGTAATTAACTTGTACAGATACAAGTACACCACACGGTAATC
ATACGGCAAGGTAGGTAGGTACTCCACGTAGCTAGCTAGCCGAGAATTATTCTGCATCATATTCATATCGACTTGAGGTAGCGATCGATCGATATGAATA
GAGATCGAGCTGGATGAATCGATCAGACGATCAGTAGTAGGGCTGGATCTTCCAGCGCTGGTTGTCGCCCTCGCACCACTTCCACAGCACGATGTCGGTG
CCGTCGCGGACGCCGCCGGAGTGCTTGATGGCCTGGCCGGTGGCCTTGTTGACGAGGGCGAAGGCAGGGTAGCCCTCCTCGTCCTTGATGCTGCTGCTCC
ACCTCATGTCCTTGATCCAGTGCTGGTAGTCGTCCTTGGGGTTCGCCGGCGCCAGCACCACCGCGCCGTTCCGCGCCG