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Detailed information on CNT30596662


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8W3M4|Y4744_ARATH, E-value = 4e-28

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690966Oryza meridionalisOryza sativa41.5353.8987.73277forward
CNT30369729Oryza meridionalisOryza glumipatula34.7846.5994.4232forward
CNT30149732Oryza meridionalisBrachypodium distachyon34.3348.2185.15229forward
CNT3099797Oryza meridionalisOryza rufipogon41.0897.8696.35274forward

Expression of CNT30596662

Peptides detected in this lncRNA

>peptide 1 (72 aa)
MPASITAVLVSMPSSCGRQPESWLLRRSTSRRESCKLEIDGGIGPVSLLLARARWLNLDKPRSAGSGPGRLL*

>peptide 2 (98 aa)
MQASLVKCSVRHVAGVVLCHPVRRRRRGVGSSGGARHVGGGRRRASLRLAVERRALRRPPLVGEARNAVVLDVEDAVLDQRQARRPDRREVVARQREA*

Sequence

>CNT30596662
AAAAGCAAATACCAGCGAGACGCTAGCTTCTAGCTGTCCCCTACTGCATGCATGCATGATGCATGCAAGCCTCACTTGTGAAGTGTAGCGTACGTCACGT
AGCTGGAGTAGTCCTTTGCCACCCTGTCCGCCGGCGCCGCCGCGGCGTCGGCAGCTCCGGCGGGGCACGCCACGTGGGTGGCGGTCGCCGCCGGGCAAGT
CTTCGGCTGGCTGTGGAACGACGCGCACTCCGCCGGCCGCCGCTGGTTGGCGAAGCCCGGAATGCAGTTGTTCTTGACGTTGAGGACGCCGTCCTTGATC
AGCGACAAGCACGCCGGCCCGACCGACGTGAAGTAGTTGCTCGACAGCGTGAGGCATGAGAAGGAGGAGGGGATCGGGCCGGTGAGCTGGTTCATGCCGG
CATCGATCACTGCGGTCTTGGTGAGCATGCCGAGCTCGTGCGGGAGGCAGCCGGAGAGTTGGTTGTTGAGGAGGAGCACCTCGAGGAGGGAATCTTGCAA
GTTGGAGATTGACGGCGGGATCGGCCCGGTGAGCTTGTTGTTGGCAAGGGCGAGGTGGCTCAACTTGGACAAGCCGAGGTCCGCAGGAAGTGGCCCGGGT
AGGTTGTTGTAGTTGAGGAGGAGCGTCTTGGCATCGGTAGCCCCAGGAATCATGCCCTTACCCCATC