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Detailed information on CNT30596661


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONZMAT000139, E-value = 1e-77

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692288Oryza meridionalisOryza sativa63.4145.9590.31227forward
CNT30520655Oryza meridionalisSetaria italica63.4191.5392.07227forward
CNT30392320Oryza meridionalisTriticum turgidum53.639687.5192forward
CNT30439818Oryza meridionalisAegilops tauschii57.5468.987.86206forward
CNT30658643Oryza meridionalisTriticum dicoccoides60.0648.5393.02215forward
CNT30450022Oryza meridionalisSaccharum spontaneum58.3820.2195.69209forward
CNT30680880Oryza meridionalisTriticum urartu60.0641.5993.02215forward
CNT30721558Oryza meridionalisTriticum spelta62.0199.1187.84222forward
CNT30341741Oryza meridionalisEragrostis tef62.5736.9693.75224forward
CNT30104991Oryza meridionalisOryza longistaminata61.1792.4198.63219forward
CNT30102585Oryza meridionalisOryza rufipogon100.28101.9992.48359forward
CNT30575680Oryza meridionalisOryza barthii62.5789.9690.18224forward
CNT30593977Oryza meridionalisEragrostis curvula60.8998.291.74218forward

Expression of CNT30596661

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MRMQRKPLPTSLLSVHSTDASSYSGLNGTSF

>peptide 2 (39 aa)
LVVVPGVLGGEAGGAVADGEAVVLAGGGEDADGAVGEEE*

Sequence

>CNT30596661
CTGGTAGTCGTCCCTGGGGTTCTTGGGGGCGAGGCAGGCGGTGCCGTTGCGGACGGTGAGGCAGTAGTCCTCGCCGGCGGCGGAGAAGACGCGGACGGTG
CGGTGGGGGAAGAGGAGTGAGCCTCGGGGCCCCAGGGGAGGATCTTCCAGCTCTGGTTGTCGCCCTTGCACCACTCCCAGAGGACGACGGCGGTGCCGTC
GCGGACACCGCCGTGGTCCTTGTCGCCGTGGAAGGCGTCGAAGTTGAGGCGGGTGTTGTTGACCATGCGGATGCAGCGGAAGCCCTTGCCGACGTCCTTG
CTCTCCGTCCACAGCACCGACGCGTCCTCGTACTCCGGGTTGAACGGCACAAGCTTCA